PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa07g034200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | CO-like | ||||||||
Protein Properties | Length: 428aa MW: 48549 Da PI: 4.646 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 25.2 | 3.5e-08 | 14 | 57 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + + +++++C ++ +lC++C + H+ H++v Csa07g034200.1 14 ARACDSCVKRRARWYCAADDAFLCHTCDGSVHSAnplarrHERV 57 578*****************************657888888876 PP | |||||||
2 | CCT | 68.4 | 1.9e-23 | 378 | 421 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ Csa07g034200.1 378 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 421 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.2E-10 | 12 | 59 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.765 | 12 | 59 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.2E-6 | 14 | 57 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.12E-9 | 15 | 59 | No hit | No description |
Pfam | PF06203 | 5.6E-18 | 378 | 420 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.083 | 378 | 420 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MMKSLASAVG GKTARACDSC VKRRARWYCA ADDAFLCHTC DGSVHSANPL ARRHERVRLK 60 TASTGKHRHA SSSSPPHQAT WHQGFTRKAR TPRGGKKSHT MVFHDLVPEM STEDQTESYE 120 VEGQLIFEVP VMNPMVEEQC FNESVETKIE FPMMPVCFKS SDEEDEDNAE SCLNGLFPTD 180 MELAQFTADV ETLLGGGIER DFHPTEDLGL GQMLKIKKEE VEEEEGVATR DVCDLNKVDE 240 TSPFEISFDY EYASKSTYEE EEEEEEEEEE EEEEEEEEDE KEDVIKNVMD MGVNEMSGNI 300 KEEKKEKALM LRLDYESVLS TWGGQGIPWT AQEPSEIDLD MVCCPTDSMG ETGADQAHHY 360 NHFRGLGLHM GEAGDGGREA RVSRYREKRR TRLFSKKIRY EVRKLNAEKR PRMKGRFVKR 420 SSIAAAH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 388 | 404 | RRTRLFSKKIRYEVRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa07g034200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010415472.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 6-like | ||||
Swissprot | Q8LG76 | 0.0 | COL6_ARATH; Zinc finger protein CONSTANS-LIKE 6 | ||||
TrEMBL | R0GHM3 | 0.0 | R0GHM3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010415472.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2467 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68520.1 | 0.0 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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