PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g033860.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 217aa    MW: 24449.7 Da    PI: 9.228
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g033860.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.63.5e-0691132854
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      Er+RR+  +++ e L++++P +      K + a  Le +++Y++sL
  Csa07g033860.1  91 KERKRRQSFKDKVEILQSVMPMP-----AKSDIAGKLENVINYLQSL 132
                     6*********************7.....6888999999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.16983132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.58E-585133No hitNo description
SuperFamilySSF474592.75E-988151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-689142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MEGNNRKDEG TYEEEEVCSF PKMVNAVCPN DRTRREQNPL QQKLGAHPSS MPNDVTMNSD  60
HGEKVDENLP DEESNRPAKL QRHVLNHRMV KERKRRQSFK DKVEILQSVM PMPAKSDIAG  120
KLENVINYLQ SLHYQIDLMK TAYAAGANSG YRLPYYGAPP PFMSPWGYYP PAIPMMPQQV  180
IRNIPQNGQG NNKVAQPGQT KPPPDQTKPS PDKAKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19196ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g033860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010419069.11e-160PREDICTED: transcription factor bHLH109
TrEMBLR0GE802e-58R0GE80_9BRAS; Uncharacterized protein
STRINGXP_010419069.11e-160(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150321417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68240.11e-47bHLH family protein