PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g033440.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ARR-B
Protein Properties Length: 559aa    MW: 62459.9 Da    PI: 7.0461
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g033440.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like67.22.8e-21232285155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kp++ Wt  L + F++a++++ G +kA+Pk+il +m+v  Lt+e+v+SHLQkYR+
  Csa07g033440.1 232 KPKVSWTDGLNDLFLQAIQHI-GLDKAVPKKILAFMNVSYLTRENVASHLQKYRI 285
                     79*******************.********************************6 PP
2Response_reg631.5e-21181341109
                     EEEESSSHHHHHHHHHHHH.HTTC......EEEE.EESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHH CS
    Response_reg   1 vlivdDeplvrellrqale.kegy......eeva.eaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeed 85 
                     vl+vdD+p+ + ++ q+l   ++y      e++  + +d+++al++lk+++  +Dli++D +m  m+Gl+l ++i+ee  +lp+ivv+a ++   
  Csa07g033440.1  18 VLVVDDDPFSCGAISQMLVqYSRYrdpsviEITViAEEDPTKALAILKHQRnnIDLIITDYNMLSMNGLQLKRRITEEIGNLPVIVVSADAN--K 110
                     89****************975666444333222225589999*****888888***********************9999********9888..6 PP

                     HHHHHHTTESEEEESS--HHHHHH CS
    Response_reg  86 alealkaGakdflsKpfdpeelvk 109
                      +e l+ Ga++fl Kp++  +l k
  Csa07g033440.1 111 EQESLSCGAMGFLPKPIHATDLPK 134
                     789***************999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.7E-2315144No hitNo description
SuperFamilySSF521723.98E-2216144IPR011006CheY-like superfamily
SMARTSM004483.2E-1616136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011029.71517140IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.7E-1818135IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.37E-1919132No hitNo description
SuperFamilySSF466892.15E-16230289IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-22230289IPR009057Homeodomain-like
TIGRFAMsTIGR015574.8E-25232285IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MTFAESLPNK SSDLRINVLV VDDDPFSCGA ISQMLVQYSR YRDPSVIEIT VIAEEDPTKA  60
LAILKHQRNN IDLIITDYNM LSMNGLQLKR RITEEIGNLP VIVVSADANK EQESLSCGAM  120
GFLPKPIHAT DLPKIYQLAL TYKRNGKSTL GTEPNHKAND TGVSVPQQIK MLPEQANVLK  180
TRKKYSSKAD SRSLNSTNGS CLISTDGSRK NRKRKPNGGS EDGASPSQPS KKPKVSWTDG  240
LNDLFLQAIQ HIGLDKAVPK KILAFMNVSY LTRENVASHL QKYRIFLRKV AELYFNQYTP  300
STSWYDTSLN NRSFYSKPGQ GFGQSRLLST TREPPVRFNQ MPYNYMNRSS TYETHHVGSG  360
SNLTLPIQSN LSLANQPSQN EERRSFFEPP VMANKIGQTS QVHGFGQLGP SAINNFKNNM  420
MSSFGSFTPN QPGLVHFSYG MQSFLNNNPE PNLELPQLED LSVHSDFHKT DELPYNISNI  480
QFDHNKGNYN GEIANTFAAP ATNHTFAALE MNPPSSNTNP NQNQEHDANP DISDWLFSDL  540
QDLVDEDFMN SLFNNDMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-19231291464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g033440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1636521e-139AL163652.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T28J14 (ESSA project).
GenBankCP0026881e-139CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010419059.10.0PREDICTED: putative two-component response regulator ARR21
SwissprotQ9LYP50.0ARR21_ARATH; Putative two-component response regulator ARR21
TrEMBLR0H0F30.0R0H0F3_9BRAS; Uncharacterized protein
STRINGXP_010419059.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61131737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.10.0response regulator 21