PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g033150.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ARR-B
Protein Properties Length: 564aa    MW: 63037.7 Da    PI: 5.1344
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g033150.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.54.7e-26229283155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r++W+ eLH++Fv+av+q+G  +kA Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Csa07g033150.1 229 KARVVWSFELHQKFVNAVNQIGCDHKAGPKKILDLMNVPWLTRENVASHLQKYRL 283
                     68****************************************************8 PP
2Response_reg807.7e-27481541107
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+p+ +++l+++l+k  y ev+++  ++eal+ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ G
  Csa07g033150.1  48 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLAREALRLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEL-DLPVIMMSVDGETSRVMKGVQHG 140
                     89*********************.***************999999**********************5543.7********************** PP

                     ESEEEESS--HHHH CS
    Response_reg  94 akdflsKpfdpeel 107
                     a d+l Kp+ ++el
  Csa07g033150.1 141 ACDYLLKPIRMKEL 154
                     *********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363924.9E-14933557IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23002.4E-4345168No hitNo description
SuperFamilySSF521722.13E-3545167IPR011006CheY-like superfamily
SMARTSM004485.6E-3246158IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.75547162IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.5E-2448155IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.20E-3149162No hitNo description
Gene3DG3DSA:1.10.10.609.1E-28226288IPR009057Homeodomain-like
SuperFamilySSF466893.76E-16227287IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-22229283IPR006447Myb domain, plants
PfamPF002492.3E-7231282IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
PTHHLSKKGT LTTFSSLSFS LPLSLSLSFL FLPSSMEKGG FSPVGLRVLV VDDDPTWLKI  60
LEKMLKKCSY EVTTCGLARE ALRLLRERKD GYDIVISDVN MPDMDGFKLL EHVGLELDLP  120
VIMMSVDGET SRVMKGVQHG ACDYLLKPIR MKELKIIWQH VLRKKLQEVR DIEGCGYEGG  180
ADWMTRYDEA HFLGGGEDVS FCKKRKDFDF DKKLLLQDES DPSSSSSKKA RVVWSFELHQ  240
KFVNAVNQIG CDHKAGPKKI LDLMNVPWLT RENVASHLQK YRLYLSRLEK EKELKCYSGG  300
VKSTDSSTKD AEVNSGHQSP GKSSFVFSGG IFQKATETDP KPLASASLPD PNTDVIMPPK  360
TKKTRIGFDP PISSSAFDSL LPWNDVPEVL ESKPVLYENS FLQQQPLPSQ SSYVTNSAPC  420
LMEEEMKPPY ETPAGGSGVT ADEFLMPQDK IPTVTIQDMD PSALSSMKLQ EFRSNVTNNT  480
EAILRSLNCE LPESNHSASL DTDLDLSWLQ GERFLANTGL QFQDYSSSPS FLSELPPHLW  540
YGNERLPDPD EYSFMVDQGL FIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-17225288163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610214}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g033150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2282160.0AK228216.1 Arabidopsis thaliana mRNA for response regulator 11, complete cds, clone: RAFL14-66-N10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415351.10.0PREDICTED: two-component response regulator ARR11-like
SwissprotQ9FXD60.0ARR11_ARATH; Two-component response regulator ARR11
TrEMBLR0GH620.0R0GH62_9BRAS; Two-component response regulator
STRINGXP_010415351.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80662740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.10.0response regulator 11
Publications ? help Back to Top
  1. Zwack PJ, et al.
    Cytokinin Response Factor 6 Represses Cytokinin-Associated Genes during Oxidative Stress.
    Plant Physiol., 2016. 172(2): p. 1249-1258
    [PMID:27550996]
  2. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]