PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g032460.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 237aa    MW: 26639.4 Da    PI: 10.1037
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g032460.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.88.7e-21653350
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     +++s  ++++++R+++++KKA ELSvLC++e +vi ++ +g l++y+
  Csa07g032460.1  6 NSSYSSSSTSLIRRQATLFKKARELSVLCAIELCVICYGADGALKTYP 53
                    579999*****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-4155IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.517156IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-15387IPR002100Transcription factor, MADS-box
PfamPF003196.8E-121052IPR002100Transcription factor, MADS-box
CDDcd002665.51E-161680No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MKIKPNSSYS SSSTSLIRRQ ATLFKKAREL SVLCAIELCV ICYGADGALK TYPEEREKVE  60
AIARRYIALS ETKRHKRSVD LNVFLADSNK KRPRRVSKFP VWDPRFDNYP GEQVTGVVQS  120
LERNVTRLQD RFRALVEVRE QRKMNQGASA SSSSTRNTIN QYLLPQQPNN QFSMFLLNHE  180
NGNVSQIPLG LMNQGQSLPM IPPELLLMNP DVGNYNSGSL GAFGPPLYDL SQPLFS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g032460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415270.11e-175PREDICTED: agamous-like MADS-box protein AGL103
SwissprotQ9LSB23e-77AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBLA0A178V6E89e-76A0A178V6E8_ARATH; AGL103
STRINGXP_010415270.11e-174(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.13e-69AGAMOUS-like 103
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]