PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g030540.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 431aa    MW: 48808.4 Da    PI: 9.6739
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g030540.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.77.2e-151060148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48
                     +g WT+eEd ll +++ ++G g W+ ++ + g   ++R++k c++rw++yl
   Csa07g030540.1 10 KGTWTAEEDSLLREYIDKYGEGKWHQVPLRAGpigLNRCGKGCRLRWLNYL 60
                     799**********************************************97 PP

2Myb_DNA-binding46.68.1e-1566109146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++  +E +ll++++++lG++ W++Ia +++ gRt++++k++w++
   Csa07g030540.1  66 RGKFNSDEVDLLIRLHRLLGNR-WSLIAGRLP-GRTANDVKNYWNT 109
                      89********************.*********.***********97 PP

3Myb_DNA-binding47.34.9e-15192239148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT eEd ll +++ ++G g W+ ++ + g++R++k+c++rw++yl
   Csa07g030540.1 192 KGAWTGEEDTLLRQCIDKYGEGKWHQVPLRAGLNRCRKSCRLRWLNYL 239
                      79********************************************97 PP

4Myb_DNA-binding47.25.1e-15245290148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ + +E +ll++++++lG++ W++Ia +++ gRt++++k++w+++l
   Csa07g030540.1 245 RGKLSSDEVDLLIRLHRLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 290
                      78999*****************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-20562IPR009057Homeodomain-like
PROSITE profilePS5129423.168564IPR017930Myb domain
SuperFamilySSF466894.3E-287107IPR009057Homeodomain-like
SMARTSM007171.0E-12962IPR001005SANT/Myb domain
PfamPF002498.6E-141060IPR001005SANT/Myb domain
CDDcd001673.72E-81260No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2063110IPR009057Homeodomain-like
PROSITE profilePS5129416.12865115IPR017930Myb domain
SMARTSM007175.6E-1465113IPR001005SANT/Myb domain
PfamPF002492.0E-1366109IPR001005SANT/Myb domain
CDDcd001672.74E-968111No hitNo description
Gene3DG3DSA:1.10.10.603.2E-21185242IPR009057Homeodomain-like
PROSITE profilePS5129424.814187243IPR017930Myb domain
SuperFamilySSF466893.82E-27189286IPR009057Homeodomain-like
SMARTSM007176.6E-14191241IPR001005SANT/Myb domain
PfamPF002493.0E-14192239IPR001005SANT/Myb domain
CDDcd001674.42E-9194239No hitNo description
Gene3DG3DSA:1.10.10.601.2E-21243293IPR009057Homeodomain-like
SMARTSM007171.9E-14244292IPR001005SANT/Myb domain
PROSITE profilePS5129419.919244294IPR017930Myb domain
PfamPF002491.2E-13245290IPR001005SANT/Myb domain
CDDcd001671.06E-9249290No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MEGSSNGLRK GTWTAEEDSL LREYIDKYGE GKWHQVPLRA GPIGLNRCGK GCRLRWLNYL  60
KPSIKRGKFN SDEVDLLIRL HRLLGNRWSL IAGRLPGRTA NDVKNYWNTN FSCCKSKTRK  120
RENTSSATPP IQRINVIKPL PQSYNDCSWL NWQPEVGFGK ASNKDGSITC NKDNQKNESV  180
NSIKAASNGL RKGAWTGEED TLLRQCIDKY GEGKWHQVPL RAGLNRCRKS CRLRWLNYLK  240
PSIKRGKLSS DEVDLLIRLH RLLGNRWSLI AGRLPGRTAN DVKNYWNTHL SKNHEPYCKP  300
KMKKKIITSP PTTSAQKIEV LKPRPRSFSS KSGFSYLNCF PKVNVIPPCS GLKNNNVCGS  360
SITCGKEEEN YESVYNIMDG KNIWLESLLE ESQEEDAPGP EGTTTETGAT LAFDVEQLWN  420
LFDEETVELD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-21829225126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH12/MYC1, EGL3, or GL3. Promotes the synthesis of phenylpropanoid-derived compounds such as anthocyanins. {ECO:0000269|PubMed:11148285, ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g030540.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By sucrose, nitrogen deficiency, ethylene, UV light and drought. {ECO:0000269|PubMed:17053893, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010470513.11e-160PREDICTED: transcription factor MYB114-like
SwissprotQ9ZTC31e-118MYB90_ARATH; Transcription factor MYB90
TrEMBLD7KTP41e-130D7KTP4_ARALL; Uncharacterized protein
STRINGXP_010470513.11e-160(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66390.11e-106myb domain protein 90
Publications ? help Back to Top
  1. Ilk N,Ding J,Ihnatowicz A,Koornneef M,Reymond M
    Natural variation for anthocyanin accumulation under high-light and low-temperature stress is attributable to the ENHANCER OF AG-4 2 (HUA2) locus in combination with PRODUCTION OF ANTHOCYANIN PIGMENT1 (PAP1) and PAP2.
    New Phytol., 2015. 206(1): p. 422-35
    [PMID:25425527]
  2. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  3. Nemie-Feyissa D,Heidari B,Blaise M,Lillo C
    Analysis of interactions between heterologously produced bHLH and MYB proteins that regulate anthocyanin biosynthesis: quantitative interaction kinetics by Microscale Thermophoresis.
    Phytochemistry, 2015. 111: p. 21-6
    [PMID:25659750]
  4. Bac-Molenaar JA,Fradin EF,Rienstra JA,Vreugdenhil D,Keurentjes JJ
    GWA Mapping of Anthocyanin Accumulation Reveals Balancing Selection of MYB90 in Arabidopsis thaliana.
    PLoS ONE, 2015. 10(11): p. e0143212
    [PMID:26588092]
  5. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  6. Li N, et al.
    The heterologous expression of Arabidopsis PAP2 induces anthocyanin accumulation and inhibits plant growth in tomato.
    Funct. Integr. Genomics, 2018. 18(3): p. 341-353
    [PMID:29372433]