PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa07g030540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 431aa MW: 48808.4 Da PI: 9.6739 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.7 | 7.2e-15 | 10 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +g WT+eEd ll +++ ++G g W+ ++ + g ++R++k c++rw++yl Csa07g030540.1 10 KGTWTAEEDSLLREYIDKYGEGKWHQVPLRAGpigLNRCGKGCRLRWLNYL 60 799**********************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.6 | 8.1e-15 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++ +E +ll++++++lG++ W++Ia +++ gRt++++k++w++ Csa07g030540.1 66 RGKFNSDEVDLLIRLHRLLGNR-WSLIAGRLP-GRTANDVKNYWNT 109 89********************.*********.***********97 PP | |||||||
3 | Myb_DNA-binding | 47.3 | 4.9e-15 | 192 | 239 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd ll +++ ++G g W+ ++ + g++R++k+c++rw++yl Csa07g030540.1 192 KGAWTGEEDTLLRQCIDKYGEGKWHQVPLRAGLNRCRKSCRLRWLNYL 239 79********************************************97 PP | |||||||
4 | Myb_DNA-binding | 47.2 | 5.1e-15 | 245 | 290 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E +ll++++++lG++ W++Ia +++ gRt++++k++w+++l Csa07g030540.1 245 RGKLSSDEVDLLIRLHRLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 290 78999*****************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-20 | 5 | 62 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.168 | 5 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.3E-28 | 7 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-12 | 9 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.6E-14 | 10 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.72E-8 | 12 | 60 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-20 | 63 | 110 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.128 | 65 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 5.6E-14 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-13 | 66 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.74E-9 | 68 | 111 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-21 | 185 | 242 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.814 | 187 | 243 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.82E-27 | 189 | 286 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.6E-14 | 191 | 241 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-14 | 192 | 239 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.42E-9 | 194 | 239 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 243 | 293 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-14 | 244 | 292 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.919 | 244 | 294 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.2E-13 | 245 | 290 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.06E-9 | 249 | 290 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 431 aa Download sequence Send to blast |
MEGSSNGLRK GTWTAEEDSL LREYIDKYGE GKWHQVPLRA GPIGLNRCGK GCRLRWLNYL 60 KPSIKRGKFN SDEVDLLIRL HRLLGNRWSL IAGRLPGRTA NDVKNYWNTN FSCCKSKTRK 120 RENTSSATPP IQRINVIKPL PQSYNDCSWL NWQPEVGFGK ASNKDGSITC NKDNQKNESV 180 NSIKAASNGL RKGAWTGEED TLLRQCIDKY GEGKWHQVPL RAGLNRCRKS CRLRWLNYLK 240 PSIKRGKLSS DEVDLLIRLH RLLGNRWSLI AGRLPGRTAN DVKNYWNTHL SKNHEPYCKP 300 KMKKKIITSP PTTSAQKIEV LKPRPRSFSS KSGFSYLNCF PKVNVIPPCS GLKNNNVCGS 360 SITCGKEEEN YESVYNIMDG KNIWLESLLE ESQEEDAPGP EGTTTETGAT LAFDVEQLWN 420 LFDEETVELD * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-21 | 8 | 292 | 25 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH12/MYC1, EGL3, or GL3. Promotes the synthesis of phenylpropanoid-derived compounds such as anthocyanins. {ECO:0000269|PubMed:11148285, ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa07g030540.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By sucrose, nitrogen deficiency, ethylene, UV light and drought. {ECO:0000269|PubMed:17053893, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010470513.1 | 1e-160 | PREDICTED: transcription factor MYB114-like | ||||
Swissprot | Q9ZTC3 | 1e-118 | MYB90_ARATH; Transcription factor MYB90 | ||||
TrEMBL | D7KTP4 | 1e-130 | D7KTP4_ARALL; Uncharacterized protein | ||||
STRING | XP_010470513.1 | 1e-160 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66390.1 | 1e-106 | myb domain protein 90 |