PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g023690.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 321aa    MW: 36478 Da    PI: 5.7738
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g023690.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.7e-13129180155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+ +N+ ++ Lr+l+P +   + ++ + a+i+  A+++I++L+
  Csa07g023690.1 129 QRMTHIAVERNRRKMMNEYLSVLRSLMPDS---YVQRCDQASIVGGAINFIRELE 180
                     79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-15128192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-13128184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.288128179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.75E-11128184No hitNo description
PfamPF000101.7E-10129180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-8134185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MALEGVFLQH DNIYSYNGKE AYSNLYIEDE PHFYDLQASL TFLDNQTENY NSTFLQEDHY  60
YEDATTFLHQ PLPEIAISEA KITPNGNSSG NPNCDMMYHR DKEIDTSGSK KATRRRTRVK  120
KNKEEINNQR MTHIAVERNR RKMMNEYLSV LRSLMPDSYV QRCDQASIVG GAINFIRELE  180
HRVHHLNING EQNEKSLSYG EIDISSATPF SDAFKLPQYS MGSSSVSENV VVENALADIE  240
VSLVESHASL KIRSRRRPKL LLNLVSALQS LGFIILHLNV STVSDFILYC FSTKMEDKCT  300
LTSVADIATA VYEMLSIQYS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129140RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g023690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010414924.10.0PREDICTED: transcription factor bHLH94-like
SwissprotQ9C7T44e-63BH096_ARATH; Transcription factor bHLH96
TrEMBLD7KPZ40.0D7KPZ4_ARALL; Uncharacterized protein
STRINGXP_010414924.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142991821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.19e-55bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]