PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa07g019360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bZIP | ||||||||
Protein Properties | Length: 373aa MW: 42064.9 Da PI: 9.6692 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 23.9 | 8.8e-08 | 241 | 287 | 17 | 63 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 A+rsR RK+++i eLe+ v++L+ae ++ + el+ l++ l +e+ Csa07g019360.1 241 AQRSRVRKLQYISELERNVQTLQAEGSKVAAELDFLNQRNLILSMEN 287 89********************************9999887777666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 0.0058 | 230 | 289 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 2.00E-14 | 233 | 280 | No hit | No description |
SuperFamily | SSF57959 | 1.13E-5 | 241 | 283 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.1E-6 | 241 | 283 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MTSSKGSQSV RNLMYPGKHA LLPPKIPFPS VSASYTEYIP SGLIGSRNSQ KLGDEKTHHQ 60 RTSSESHLVE ELPFWLDDLL NEPESPARKC GHRRSSSDSY AYLDVANATN ISLTLQNDFS 120 YRNTVSSRGM QELDRNKIAQ DAAFYSDANF LKHKSRQRDP LVASGARPSW LLFPRESGGG 180 KNMGSSYMSQ EATVLSERKN YAEPLSHDPN SKLYSSEENN SNPSPVTYEA DNTKRAKQQF 240 AQRSRVRKLQ YISELERNVQ TLQAEGSKVA AELDFLNQRN LILSMENKAL KQRLESIAQE 300 KLIKQMEQEV LEKEIGRLRA LYQQQQQTQK PSASRGRTTG KDLESQFSSL SLNTKDSNCR 360 RDSVSVMGQF HF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa07g019360.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT003980 | 0.0 | BT003980.1 Arabidopsis thaliana clone RAFL15-22-D03 (R20596) putative bZIP family transcription factor (At1g58110) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010414774.1 | 0.0 | PREDICTED: uncharacterized protein At4g06598 | ||||
TrEMBL | D7KY87 | 0.0 | D7KY87_ARALL; Predicted protein | ||||
STRING | XP_010414774.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3360 | 24 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58110.2 | 0.0 | bZIP family protein |