PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa07g017080.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

M-type_MADS

Protein Properties

Length: 552aa MW: 59862.8 Da PI: 4.7644

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa07g017080.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	25.4	1.9e-08	35	63	22	50
HHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 22 KKAeELSvLCdaevaviifsstgklyeys 50 KKA ELSvLC+ v i ++++ l+ ++ Csa07g017080.1 35 KKAIELSVLCGNSVGFICHGPDNDLHVWP 63 9**************************98 PP
2	SRF-TF	29.2	1.2e-09	279	307	22	50
HHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 22 KKAeELSvLCdaevaviifsstgklyeys 50 KKA ELSvLC+ v i +++++ l+ ++ Csa07g017080.1 279 KKATELSVLCGNSVGFICYGPDNDLHVWP 307 9**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	8.55	17	66	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.79E-10	20	93	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.1E-5	32	62	IPR002100	Transcription factor, MADS-box
CDD	cd00266	5.11E-15	263	337	No hit	No description
SuperFamily	SSF55455	2.22E-10	265	339	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.0E-7	276	306	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 552 aa Download sequence Send to blast
MAPCDKNPSK CGGDGDDDLK TKKYLFKQKF PTFKKKAIEL SVLCGNSVGF ICHGPDNDLH 60 VWPDPQDNPQ ALPEIVGKFN SLSDHMRMSH ASDLFDLPHL KGLSNEELLR HLAKLNSQSV 120 GIKQKKMSLL TKRGISKKPP NDDHLRVSDN NAAAIISNRK EAAALSDDQL GFRDHETVNN 180 LGSSAAASKV CSVSDSSLHN PPLTLGLSCG DYSPVDPLPA TDHMNPRCEN QVIPSHQQNQ 240 SLLRSSSPSK SCGDDDDDDD DLKRAKRNFF KQIFPTFKKK ATELSVLCGN SVGFICYGPD 300 NDLHVWPEPE ENPQAIPEIV AKFNGLSDLK RKNHASDLYG LPMLKGLSGD ELRNHLVNLD 360 SHLLGIKQKK MSIIGRSSST HKPRDAGVSD SSVLNPLTLG LSCGDYYPVD SMPATDNMNP 420 CCEMEVIPSD LQNQSELGSS SLSLEMAPCD NDPNKFGGGC EKEVIPSDQQ NQSELRLSSL 480 SLEMASYDDD DDDDGVSDSS MLDSSGSSGG DSLPMDLIPT TTYSLEVCAN EGASDELSRI 540 DLHFASTLFP G*

Sequence ? help Back to Top

Protein Sequence Length: 552 aa Download sequence Send to blast

MAPCDKNPSK CGGDGDDDLK TKKYLFKQKF PTFKKKAIEL SVLCGNSVGF ICHGPDNDLH  60
VWPDPQDNPQ ALPEIVGKFN SLSDHMRMSH ASDLFDLPHL KGLSNEELLR HLAKLNSQSV  120
GIKQKKMSLL TKRGISKKPP NDDHLRVSDN NAAAIISNRK EAAALSDDQL GFRDHETVNN  180
LGSSAAASKV CSVSDSSLHN PPLTLGLSCG DYSPVDPLPA TDHMNPRCEN QVIPSHQQNQ  240
SLLRSSSPSK SCGDDDDDDD DLKRAKRNFF KQIFPTFKKK ATELSVLCGN SVGFICYGPD  300
NDLHVWPEPE ENPQAIPEIV AKFNGLSDLK RKNHASDLYG LPMLKGLSGD ELRNHLVNLD  360
SHLLGIKQKK MSIIGRSSST HKPRDAGVSD SSVLNPLTLG LSCGDYYPVD SMPATDNMNP  420
CCEMEVIPSD LQNQSELGSS SLSLEMAPCD NDPNKFGGGC EKEVIPSDQQ NQSELRLSSL  480
SLEMASYDDD DDDDGVSDSS MLDSSGSSGG DSLPMDLIPT TTYSLEVCAN EGASDELSRI  540
DLHFASTLFP G*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa07g017080.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019083117.1	0.0	PREDICTED: uncharacterized protein LOC104700767 isoform X1
Refseq	XP_019083118.1	0.0	PREDICTED: uncharacterized protein LOC104700767 isoform X1
Swissprot	Q9ZUI9	3e-51	AGL49_ARATH; Agamous-like MADS-box protein AGL49
TrEMBL	R0I988	2e-75	R0I988_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010414647.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11232	9	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G60040.1	5e-49	AGAMOUS-like 49

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]