PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa07g016940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 282aa MW: 32196.4 Da PI: 6.5159 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 52.3 | 7.3e-17 | 14 | 59 | 2 | 47 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 ien+s r+ tf kR++g KK +ELSvLC++e++ +i+s+ + + Csa07g016940.1 14 YIENDSMRKATFNKRKKGFEKKIHELSVLCGIEACAVIYSPFNSVP 59 59**************************************988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 17.128 | 5 | 65 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.0E-22 | 5 | 64 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.35E-23 | 6 | 87 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 7.35E-33 | 6 | 87 | No hit | No description |
PRINTS | PR00404 | 1.9E-10 | 7 | 27 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.7E-16 | 15 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-10 | 27 | 42 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-10 | 42 | 63 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MVNTKTRKKL NLSYIENDSM RKATFNKRKK GFEKKIHELS VLCGIEACAV IYSPFNSVPE 60 VWPSNLGVKN VVEKFEMLKD MEQEKKMRKM KDNAERMMKE AMFELLGGKA DRFKLTNIHR 120 EDLCKYIDQY LKELYHHKNK ILTQSHVEYG ESSEAATNVM APTSSLEVNS QFFPTLNVSN 180 SPQVTNDLWL LRPIISSSQI PEEVNTFPGN NLSAAAAQQD YYPVINPVGV YNHNANVNHL 240 GHNQYQQQDG YPTIVPQYGI DNLSQNQGQQ EEWLVSDDDL S* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa07g016940.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010486064.1 | 1e-170 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | S6BIQ2 | 1e-116 | S6BIQ2_TURGL; Agamous-like MADS-box protein AGL45 (Fragment) | ||||
STRING | XP_010486064.1 | 1e-169 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.1 | 3e-90 | M-type_MADS family protein |