PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g016260.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 288aa    MW: 32491.4 Da    PI: 8.2843
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g016260.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.66.1e-17208242135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C tt Tp+WR+gp g ktLCnaCG+++r+ +l
  Csa07g016260.1 208 CTHCETTRTPQWREGPCGRKTLCNACGVRFRSGRL 242
                     *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004019.2E-16202252IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-14206265No hitNo description
PROSITE profilePS5011411.701206238IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-13206239IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.19E-13207264No hitNo description
PfamPF003208.2E-15208242IPR000679Zinc finger, GATA-type
PROSITE patternPS003440208233IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MNNGSWLPEE DFKGLEDNFF DNLVEHMDDI PLEDIETADD DEEEDWVTGF KNLGPPPLDV  60
LTSLSSEFNC KEQRVRVQKS ATIVKQSSSS DVSSTVDNFP PDVKVSKLFQ STSPVSVLEN  120
SNGSALSQNQ NRIQRLAFLV KGTRSKRKRP TTLRFFQSLG AEMSQMFVPE ESESENSAKK  180
KRKKYRSPPQ SVCNSPELFN PDGTVRKCTH CETTRTPQWR EGPCGRKTLC NACGVRFRSG  240
RLVPEYRPAS SPTFVPTVHS NSHRKIIEMR RKDEGQPDTR KIRTVTS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179183KKRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g016260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010414546.10.0PREDICTED: putative GATA transcription factor 13 isoform X3
RefseqXP_010414547.10.0PREDICTED: putative GATA transcription factor 13 isoform X2
SwissprotQ9SKN61e-117GAT13_ARATH; Putative GATA transcription factor 13
TrEMBLR0FY421e-154R0FY42_9BRAS; Uncharacterized protein
STRINGXP_010470100.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16812589
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28340.11e-100GATA transcription factor 13