PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa07g016220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ARF | ||||||||
Protein Properties | Length: 706aa MW: 77675.8 Da PI: 7.8512 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.3 | 3.4e-24 | 117 | 218 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ +++ + t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF +++ Csa07g016220.1 117 FAKTLTQSDANNGGGFSVPRYCAETIfprldytAEPPVQ--TVIAKDIHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLIAGDSIVFL--RSE 207 89****************************987555555..8************************************************..458 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ Csa07g016220.1 208 SGDLCVGIRRA 218 9999****997 PP | |||||||
2 | Auxin_resp | 110.8 | 1.4e-36 | 287 | 369 | 2 | 83 |
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 + +a+ +++Fe vY+Prast+eF+vk+++v++a++++++ GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+ Csa07g016220.1 287 VARAACGQAFEAVYYPRASTPEFCVKAADVRSAMRIRWCSGMRFKMAFETEDSSRISWfMGTVSAVQVADPIRWPNSPWRLLQ 369 6778899**************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.4E-37 | 110 | 223 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.71E-29 | 113 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.40E-21 | 116 | 217 | No hit | No description |
PROSITE profile | PS50863 | 13.155 | 117 | 219 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.8E-22 | 117 | 218 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-21 | 117 | 219 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.7E-31 | 287 | 369 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 18.416 | 592 | 680 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0009743 | Biological Process | response to carbohydrate | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0048442 | Biological Process | sepal development | ||||
GO:0048589 | Biological Process | developmental growth | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 706 aa Download sequence Send to blast |
MEQEKSLDPQ LWHACAGSMV QIPTVNSTVF YFAQGHTEHA HAPPDFHAPR VPPLILCRVV 60 SVKFLADSDT DEVFAKITLL PLPGNNDLDL DNDAVLCLTP SSDGNGNVNV NEKPASFAKT 120 LTQSDANNGG GFSVPRYCAE TIFPRLDYTA EPPVQTVIAK DIHGETWKFR HIYRGTPRRH 180 LLTTGWSTFV NQKKLIAGDS IVFLRSESGD LCVGIRRAKR GGIGSNGLGS DSPYPGFSGF 240 LRDDETTTTT TSKLMMMKRN GGNDGNAASA AAATAGRVRV EAVAEAVARA ACGQAFEAVY 300 YPRASTPEFC VKAADVRSAM RIRWCSGMRF KMAFETEDSS RISWFMGTVS AVQVADPIRW 360 PNSPWRLLQV AWDEPDLLQN VKRVSPWLVE LVSNMPAIHL SPFSPRKKIR IPQPFEFPFD 420 GTKFPIFSPG GESMCYLSND NNNNNAPAGI QGARQAQQLF GSPSPSLLSD LNLSSYSGNK 480 LQSTAMFLSG FNPRHHYDNL VSRQGRGDTE NSNNISCSLT MGNPAMVHQD KKKTGGGSVK 540 THQFLLFGQP ILTEQQVMNR KRSLEEEAQA REEKCSVARG LTCNYGFQGL ETGHCKVFME 600 SEDVGRTLDL SVIGSYQELY RKLAEMFPIE ERSDLLTHVV YRDSNGVIKR IGEEPFSDFM 660 RATKRLTIKM DIGGDNVRKT WITGIRNGEN GIDASTKTGP LSIFA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 2e-79 | 7 | 390 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa07g016220.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010414540.1 | 0.0 | PREDICTED: auxin response factor 10-like | ||||
Swissprot | Q9SKN5 | 0.0 | ARFJ_ARATH; Auxin response factor 10 | ||||
TrEMBL | D7LHN6 | 0.0 | D7LHN6_ARALL; Auxin response factor | ||||
STRING | XP_010414539.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28350.1 | 0.0 | auxin response factor 10 |