PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g016040.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Dof
Protein Properties Length: 346aa    MW: 38057.5 Da    PI: 8.0407
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g016040.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.33.3e-38104163463
          zf-Dof   4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                     +a++cprC+s ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+r+nk+sss
  Csa07g016040.1 104 EAQNCPRCESPNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRRNKRSSS 163
                     5789****************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027012.0E-32105160IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.975106160IPR003851Zinc finger, Dof-type
ProDomPD0074788.0E-24106155IPR003851Zinc finger, Dof-type
PROSITE patternPS013610108144IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
SSLFISCSPL FPKLSLFLSL SLVSLFFWSL SKNINHNCLL LLYNYVIVAD LLLSFIAWMD  60
PQQEISNETL ETILVSSSKG NNNNNKKMEE EMKKKGSRGE LGGEAQNCPR CESPNTKFCY  120
YNNYSLSQPR YFCKSCRRYW TKGGTLRNVP VGGGCRRNKR SSSFSKNNNN KSINFHNDPL  180
HNNPLITGMP QSSFGYDSID LNLAFATLQK HHSSSQATTP SFGFGGDLSI YGNSANDAGI  240
FGGQNDNFNN SLCYGCMSGN GNNHQCDIKM ASTLGISLEG NERKQENVGN NNNISESPSK  300
VLWGFPWQMT GDSAGVVPEI DPGRESWNGL ASSWNNNGLL NAPLV*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g016040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0704210.0AY070421.1 Arabidopsis thaliana putative DOF zinc finger protein (At2g28510) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010414514.10.0PREDICTED: dof zinc finger protein DOF2.1-like
SwissprotQ8LE431e-157DOF21_ARATH; Dof zinc finger protein DOF2.1
TrEMBLD7LJK01e-172D7LJK0_ARALL; Uncharacterized protein
STRINGXP_010414514.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69602743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28510.11e-146Dof family protein