PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa07g015990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | AP2 | ||||||||
Protein Properties | Length: 449aa MW: 49446.6 Da PI: 7.8594 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.6 | 5.5e-17 | 145 | 194 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Csa07g015990.1 145 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 194 78*******************......55************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.0E-9 | 145 | 194 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-15 | 145 | 202 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.2E-32 | 146 | 208 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.7E-17 | 146 | 202 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.29E-11 | 146 | 201 | No hit | No description |
PROSITE profile | PS51032 | 17.82 | 146 | 202 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.41E-6 | 237 | 282 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.68E-11 | 237 | 282 | No hit | No description |
SMART | SM00380 | 5.7E-10 | 238 | 286 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MLDLNLDADS PDSTQYGGDS YLDRQTSDGS AGNRLEESGT STSSVINADG DEDSCSNTRG 60 FTLSFDILKV GTPVAGVTTT KEFFPVTGDC GHLRDFQGSS SRSWIDLSFD GETKLAAPVP 120 VPVPTPAPVP AQVKKSRRGP RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA 180 AARAYDRAAI KFRGVDADIN FTLGDYEEDM KQVQNLSKEE FVHILRRQST GFSRGSSKYR 240 GVTLHKCGRW EARMGQFLGK KAYDKAAINT NGREAVTNFE MSSYQNEINS QVNNEGGHEK 300 LDLNLGMSLS PGNAPKQNGR LFHFPSNTYE TQRGVSLRMD NEFMGKPVNT PIPYGSSDHR 360 VYWNGACPSY NNPVEGRATE KRCEAEGMMS NWGWQRPGQT STVQQQPPGP QPPPPPLFSV 420 AAASSGFSHF RPQPPNDNAT RGYFYPQP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa07g015990.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF003100 | 0.0 | AF003100.1 Arabidopsis thaliana AP2 domain containing protein RAP2.7 mRNA, partial cds. | |||
GenBank | AF325074 | 0.0 | AF325074.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds. | |||
GenBank | AY050815 | 0.0 | AY050815.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds. | |||
GenBank | AY091418 | 0.0 | AY091418.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010414508.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X2 | ||||
Swissprot | Q9SK03 | 0.0 | RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | R0HUN3 | 0.0 | R0HUN3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010414507.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5861 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.1 | 0.0 | related to AP2.7 |