PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa07g015880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 358aa MW: 41321.2 Da PI: 6.28 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 45.7 | 8.1e-15 | 9 | 51 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 ien+ r + +Rr+g+lKK +ELSvLCd+ + +iifs++ Csa07g015880.1 9 IENDKARARRLKQRREGLLKKVKELSVLCDITAFLIIFSPNEA 51 99*************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.502 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-6 | 1 | 21 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.9E-16 | 1 | 58 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.83E-24 | 3 | 82 | No hit | No description |
SuperFamily | SSF55455 | 1.19E-17 | 3 | 78 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-12 | 9 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-6 | 21 | 36 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-6 | 36 | 57 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MAKVKLAWIE NDKARARRLK QRREGLLKKV KELSVLCDIT AFLIIFSPNE AVPMVWPSVE 60 MARGILDGFF ALPKFVQKQK ETIVKSILEE KIKTVHEQLM KSNEKKKEYV VDELMMRLQH 120 GRGFDDLNLS EIHVLLSFSK DKIILYRKKL NFMQFSTLRD PPVLPFEVQA EQLTITTNDA 180 FVGSGQDDDK NRKKDEEPRI FNIDTFKENK SYYLIDRWVL DPKPLEHVIY QQMRNDNPNF 240 VSYFPYQGSD SNGNASLEME PVSPQVMTFH GLVGSASQPL QHCNMTNNAI MAMNQPFDLM 300 SRVLERQDEG NNINNSEIYM TNNTATTNND VRQEPPPNEI TSREDIVNLS PFDINRN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 16 | 23 | RRLKQRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa07g015880.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010414495.1 | 0.0 | PREDICTED: MADS-box transcription factor 21-like | ||||
TrEMBL | A0A178VQF2 | 1e-131 | A0A178VQF2_ARATH; AGL48 | ||||
TrEMBL | Q9XEF1 | 1e-131 | Q9XEF1_ARATH; AGAMOUS-like 48 | ||||
STRING | XP_010414495.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4724 | 14 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40210.1 | 1e-136 | AGAMOUS-like 48 |