PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa07g015680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 346aa MW: 36910.3 Da PI: 9.8129 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.6 | 6.7e-39 | 91 | 150 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e alkcprCds+ntkfCy+nny+l+qPr+fCkaCrryWt+GGalrnvPvGgg+r+nkk + Csa07g015680.1 91 EGALKCPRCDSANTKFCYFNNYNLTQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKGK 150 5689****************************************************9865 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-37 | 75 | 145 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.7E-32 | 93 | 148 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.683 | 94 | 148 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 96 | 132 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 346 aa Download sequence Send to blast |
MVFSSVSSFL DPPINWPQST NSNNHPHHLQ LQENGSLVSG HHQVLSHHFP QNPNPNHHHV 60 DTTAATSVDP GGLNGQAAER ARLAKNSQPP EGALKCPRCD SANTKFCYFN NYNLTQPRHF 120 CKACRRYWTR GGALRNVPVG GGCRRNKKGK SGNSKSSSSS SQSKPSTSMV NVTSPTSTSN 180 VQHQTNSQFP FLPTLQNLTQ LGGIGLNLSP INGNNGGNGN TSSGYLNDLG FYHGGNTSGP 240 VIGNNNNNSN NGNNIMTSLG SANHFALFDR TMGLYNFPNE GNMGLSSNGA TRVSQTAPVK 300 MEDNHLGNIS RPASGLTSPG NQSNQYWTGQ GLPGSSSNDH HQHLM* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa07g015680.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT032877 | 0.0 | BT032877.1 Arabidopsis thaliana unknown protein (At2g28810) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010414480.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.2 isoform X1 | ||||
Swissprot | Q9ZV33 | 0.0 | DOF22_ARATH; Dof zinc finger protein DOF2.2 | ||||
TrEMBL | A0A178VZ40 | 0.0 | A0A178VZ40_ARATH; Uncharacterized protein | ||||
STRING | XP_010414480.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5336 | 17 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28810.1 | 1e-170 | Dof family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|