PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g015340.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 854aa    MW: 96085.5 Da    PI: 5.0211
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g015340.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS305.31.4e-934447541311
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++ L++cA+avs +d + a+ lL+r+++ +s++gd ++Rla+yf++ L+arla+ ++++y al++++ts    s+ l+a++++  v+P+ k++ 
  Csa07g015340.1 444 LRTMLVSCAQAVSINDRRTADDLLTRIRQYSSSYGDGTERLAHYFANSLEARLAGIGTQVYTALSSKKTS---ASDMLKAYQTYISVCPFKKIAI 535
                     5789**************************************************************9999...9********************* PP

            GRAS  96 ltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                     + aN+ I++ ++++  +++HiiDf+is+G+QWp+L++ La R++++ +lRiTg++ p+ g   +e + etg+rLak+++++++pfe+n+ +a+++
  Csa07g015340.1 536 IFANHSIMRLASTAnaKTIHIIDFGISYGFQWPSLIHRLAWRRGSSCKLRITGIELPQRGfrPAEGVIETGRRLAKYCQKFNIPFEYNA-IAQKW 629
                     *******99877766699****************************************99*****************************.7**** PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                     ++++le+L++k+gE +aVn+ ++  +llde+v+++s+rd+vLkl+++++P+v+  +    ++n++ F++rf e l +ys+lfd+ +++l r++  
  Csa07g015340.1 630 DTIKLEDLKLKEGEFVAVNSLFRFRNLLDETVAVHSPRDAVLKLIRKIKPDVFMPAILSGSYNAPFFVTRFREVLFHYSSLFDMCDTNLTRDDPM 724
                     *********************************************************************************************** PP

            GRAS 282 rikvErellgreivnvvacegaerrerhet 311
                     r++ E+e+ grei+nvvaceg+er+er e+
  Csa07g015340.1 725 RVMFEKEFYGREIMNVVACEGTERVERPEN 754
                     ***************************985 PP
2GRAS82.85.8e-26752850276373
            GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvs 369
                     p+++  r++ E+e+ grei+nvvaceg+er+er e++++W++r ++aGF+++pl+++ +++ kll+++ +  +++ v+++ ++l++gWk+r +++
  Csa07g015340.1 752 PENDPMRVMFEKEFYGREIMNVVACEGTERVERPESYKQWQARAMRAGFRQIPLDKDLVQKLKLLVENGYkTKEFDVDQDCNWLLQGWKGRIVYA 846
                     678899*************************************************************9988999********************* PP

            GRAS 370 vSaW 373
                      S W
  Csa07g015340.1 847 SSIW 850
                     **** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.62418830IPR005202Transcription factor GRAS
PfamPF035145.0E-91444754IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 854 aa     Download sequence    Send to blast
MGSYSAGFPE SLDWFDFPGL GNGLYLNDQP LLDTGCVPPL PPEPPSYSQQ NLASADADFS  60
DSVLKYISQV LMEEDMEDKP CMFHDALSLQ AAEKSLYEAL GEKYPGDYDS SQPLITTTRP  120
APLVSSPGGS SYTSSITTTS SDSQWSFDCL ENNRPSSWLQ TPIPNNFVFQ STSTRSSPSQ  180
VLMEEDMEDK PCMFHDALSL QAAEKSLYEA LGEKYPGDYD SSQPLITTTR PAPLVSSPGG  240
SSYTSSITTT SSDSQWSFDC LENNRPSSWL QTPIPNNFVF QSTSTRSSPS PQSVVFGSGL  300
SNDLVSNMFN DKDMALQFKK GMEEASKFLP KSSQLVIDVE NYIPALGSKE KNNSVPYRLT  360
GKKSQLREDE DSDEERSKKQ AAVYVDEAEL TEMFDKVLIF GEPKEPPVCI LQESFQKEPE  420
KASSVSKSHK GEKPAANDKE TPDLRTMLVS CAQAVSINDR RTADDLLTRI RQYSSSYGDG  480
TERLAHYFAN SLEARLAGIG TQVYTALSSK KTSASDMLKA YQTYISVCPF KKIAIIFANH  540
SIMRLASTAN AKTIHIIDFG ISYGFQWPSL IHRLAWRRGS SCKLRITGIE LPQRGFRPAE  600
GVIETGRRLA KYCQKFNIPF EYNAIAQKWD TIKLEDLKLK EGEFVAVNSL FRFRNLLDET  660
VAVHSPRDAV LKLIRKIKPD VFMPAILSGS YNAPFFVTRF REVLFHYSSL FDMCDTNLTR  720
DDPMRVMFEK EFYGREIMNV VACEGTERVE RPENDPMRVM FEKEFYGREI MNVVACEGTE  780
RVERPESYKQ WQARAMRAGF RQIPLDKDLV QKLKLLVENG YKTKEFDVDQ DCNWLLQGWK  840
GRIVYASSIW VPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-434488508374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g015340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0053150.0AC005315.3 Arabidopsis thaliana chromosome 2 clone T9I4 map mi54, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010414448.10.0PREDICTED: scarecrow-like protein 33
SwissprotP0C8830.0SCL33_ARATH; Scarecrow-like protein 33
TrEMBLR0HTI10.0R0HTI1_9BRAS; Uncharacterized protein
STRINGXP_010414448.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.10.0GRAS family protein