PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g011090.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 74aa    MW: 8267.43 Da    PI: 4.8788
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g011090.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.20.000172401255
                    HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    R d++ +++  L++l+ +      +K + a++L + ++YI+ Lq
  Csa07g011090.1  2 RKDKLGERITALQQLVSPY-----GKTDTASVLLEGMQYIQFLQ 40
                    66888999********999.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.893139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-11253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-5244No hitNo description
Gene3DG3DSA:4.10.280.101.5E-8250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
ERKDKLGERI TALQQLVSPY GKTDTASVLL EGMQYIQFLQ EQVKVLSAPY LQATTPTNTQ  60
VNRICDPLFY SDC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g011090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5760412e-56AJ576041.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH-beta gene).
GenBankBT0109112e-56BT010911.1 Arabidopsis thaliana At2g31730 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010414091.11e-35PREDICTED: transcription factor bHLH114, partial
SwissprotQ7XJU14e-31BH154_ARATH; Transcription factor bHLH154
TrEMBLR0HEN72e-30R0HEN7_9BRAS; Uncharacterized protein
STRINGXP_010414091.15e-35(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80551923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31730.12e-33bHLH family protein