PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g010180.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 496aa    MW: 55644.2 Da    PI: 5.1089
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g010180.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94e-072154146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+WT+ Ed +l ++v+++G +           gRt++++k++w++
   Csa07g010180.1 21 KGPWTATEDAILTEYVRKHG-E-----------GRTDNEIKNYWNT 54
                     79******************.4...........6999999999997 PP
2Myb_DNA-binding31.93e-10791091446
                      HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  14 davkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++++lG++ W++ a+ ++ gRt++++k++w++
   Csa07g010180.1  79 ELHAKLGNK-WARMASQLP-GRTDNEIKNYWNT 109
                      799******.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.0851660IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-91759IPR009057Homeodomain-like
SMARTSM007171.5E-52058IPR001005SANT/Myb domain
SuperFamilySSF466893.55E-1521112IPR009057Homeodomain-like
CDDcd001676.71E-723109No hitNo description
SMARTSM007170.002161113IPR001005SANT/Myb domain
PROSITE profilePS512949.02170115IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-1579112IPR009057Homeodomain-like
PfamPF002491.5E-879109IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MDGGEETTTT TTAMEARGLK KGPWTATEDA ILTEYVRKHG EGRTDNEIKN YWNTRMKRRQ  60
RAVPFSSKTK IFFIITNXEL HAKLGNKWAR MASQLPGRTD NEIKNYWNTR MKRRQRAGLP  120
LYPHDTHQHH QGIDDNDDND EFEFDLSSFQ FQNQDLLHHN QQNMIQYTNS SNTSSSISSS  180
SFSSSSSQPS KKMRPNDPLV STNPGLNLIP DSPMNFQMFS LYNNSLETDN INSHFGFSLP  240
LSSSSSSNEF CNPNHILEFI SENSDTSNYH KKDIDALSYS SLLMGDHEMR PSSFPLGLEN  300
TVLELPSNQT TIDSFSSNPI PDNGVHLEPP AGNSGLLDAL LEESQALSRG GLFKDVRVSS  360
SDLCKVQEER MKMDFENRLT DHLNSSHQSS LGANPKIHKY NEPTMVKATV DDDDDLLMSL  420
LNNFPSTTTP LPDWYRMTEI QNEASYLAPP SGSILMGTYQ GNSREEEPAT VSPSSSVDPM  480
ASLGTCYWSN MPRIC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-14191145107B-MYB
1h8a_C1e-141911425127MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:24278028, PubMed:25268707). Binds to 5'-CAACTGTC-3' and/or 5'-TAACAAA-3' motif in target gene promoter (e.g. alpha-amylase) to promote their expression (PubMed:11743113). Positive regulator of abscisic acid (ABA) responses leading to growth arrest during seed germination (PubMed:17217461). Promotes the expression of aleurone-related genes (e.g. CP1, CP, GASA1, BXL1 and BXL2) in seeds. Together with MYB33 and MYB65, promotes the programmed cell death (PCD) leading to vacuolation of protein storage vacuoles (PSVs) in the aleurone layers during seed germination (PubMed:20699403). Maybe involved in the regulation of leaves lamina morphogenesis (PubMed:25268707). Involved in pollen grain development (PubMed:22101548). Together with MYB97 and MYB120, functions as a male factor that controls pollen tube-synergid interaction in fertilization. Required for pollen tube growth arrest and sperm cell release in the female gametophyte, probably via the regulation of pollen tube-specific gene expression (PubMed:24278028, PubMed:23791732). {ECO:0000269|PubMed:11743113, ECO:0000269|PubMed:17217461, ECO:0000269|PubMed:20699403, ECO:0000269|PubMed:22101548, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028, ECO:0000269|PubMed:25268707}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g010180.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed in germinating seeds by microRNA159 (miR159)-mediated cleavage in an abscisic acid (ABA) and ABI3-dependent manner, probably to desensitize hormone signaling during seedling stress responses (PubMed:15226253, PubMed:17217461). Induced by increased upon gibberellic acid (GA) treatment (PubMed:20699403). {ECO:0000269|PubMed:15226253, ECO:0000269|PubMed:17217461, ECO:0000269|PubMed:20699403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010413991.10.0PREDICTED: transcription factor GAMYB-like
SwissprotO808830.0MB101_ARATH; Transcription factor MYB101
TrEMBLA0A178VTW30.0A0A178VTW3_ARATH; MYB101
STRINGXP_010413991.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51002747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.10.0myb domain protein 101
Publications ? help Back to Top
  1. Zheng Z, et al.
    Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy.
    Plant Physiol., 2017. 174(3): p. 1764-1778
    [PMID:28515145]
  2. Xue T,Liu Z,Dai X,Xiang F
    Primary root growth in Arabidopsis thaliana is inhibited by the miR159 mediated repression of MYB33, MYB65 and MYB101.
    Plant Sci., 2017. 262: p. 182-189
    [PMID:28716415]