PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa07g007900.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 161aa MW: 18346.9 Da PI: 10.0175

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa07g007900.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.4	4.2e-51	16	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelvv+yL++kv+g +l++ +vi+e+d++k++PwdLp ++e yfFs+++ ky++g+r+nr+t sgyWkatg dk++ + Csa07g007900.1 16 LPPGFRFHPTDEELVVQYLRRKVTGLPLPA-SVIPETDVCKSDPWDLPGD---CDSERYFFSTKEAKYPNGNRSNRSTGSGYWKATGIDKQIGK- 105 79**************************.99***********44...47899******************************99. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+ +vg+kktLvfykg+ p+g++t+Wv+heyrl Csa07g007900.1 106 KTLAVGMKKTLVFYKGKPPNGTRTNWVLHEYRL 138 8999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-56	11	146	IPR003441	NAC domain
PROSITE profile	PS51005	52.257	16	160	IPR003441	NAC domain
Pfam	PF02365	1.1E-27	17	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MEKRSTTIKN RGVLRLPPGF RFHPTDEELV VQYLRRKVTG LPLPASVIPE TDVCKSDPWD 60 LPGDCDSERY FFSTKEAKYP NGNRSNRSTG SGYWKATGID KQIGKKTLAV GMKKTLVFYK 120 GKPPNGTRTN WVLHEYRLVD SQQESSHVRY SQILESVIYY *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-49	14	159	15	163	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-49	14	159	15	163	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-49	14	159	15	163	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-49	14	159	15	163	NO APICAL MERISTEM PROTEIN
3swm_A	1e-49	14	159	18	166	NAC domain-containing protein 19
3swm_B	1e-49	14	159	18	166	NAC domain-containing protein 19
3swm_C	1e-49	14	159	18	166	NAC domain-containing protein 19
3swm_D	1e-49	14	159	18	166	NAC domain-containing protein 19
3swp_A	1e-49	14	159	18	166	NAC domain-containing protein 19
3swp_B	1e-49	14	159	18	166	NAC domain-containing protein 19
3swp_C	1e-49	14	159	18	166	NAC domain-containing protein 19
3swp_D	1e-49	14	159	18	166	NAC domain-containing protein 19
4dul_A	1e-49	14	159	15	163	NAC domain-containing protein 19
4dul_B	1e-49	14	159	15	163	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269\|PubMed:24243147}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa07g007900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF325080	1e-167	AF325080.1 Arabidopsis thaliana putative NAM (no apical meristem)-like protein (At2g33480) mRNA, complete cds.
GenBank	AF410299	1e-167	AF410299.1 Arabidopsis thaliana At2g33480/F4P9.25 mRNA, complete cds.
GenBank	AY093730	1e-167	AY093730.1 Arabidopsis thaliana At2g33480/F4P9.25 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010413856.1	1e-108	PREDICTED: NAC domain-containing protein 41 isoform X1
Refseq	XP_010413857.1	1e-108	PREDICTED: NAC domain-containing protein 41 isoform X2
Swissprot	O22798	7e-98	NAC41_ARATH; NAC domain-containing protein 41
TrEMBL	A0A178VUZ2	2e-98	A0A178VUZ2_ARATH; NAC041
TrEMBL	R0HQU6	8e-98	R0HQU6_9BRAS; Uncharacterized protein
STRING	XP_010413856.1	1e-107	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1806	27	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33480.2	1e-100	NAC domain containing protein 41

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]