PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g007880.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CO-like
Protein Properties Length: 418aa    MW: 46127.1 Da    PI: 6.6902
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g007880.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.93.1e-06746437
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                      C+ ++e  + lfC+ ++  lC  C ++ H+       H
  Csa07g007880.1  7 VACDFCGERTAVLFCRADSAKLCLPCDQHVHSAnllskkH 46
                    57******99*******************99555565556 PP
2zf-B_box22.82e-074991339
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                     ++C+++++++++  C++++  lC++C    H +      H++
  Csa07g007880.1 49 SQICDNCSKEPVSVRCFTDNLVLCQECDWDVHGScssasaHER 91
                    689************************9988844667777765 PP
3CCT63.56.6e-22372415144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R++a++RYkeK+ktR+++K+irYe+RKa+Ae+R Rv+GrFvk++
  Csa07g007880.1 372 RDNAMQRYKEKKKTRRYDKTIRYETRKARAETRLRVRGRFVKAT 415
                     899***************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.9E-13451IPR000315B-box-type zinc finger
PROSITE profilePS501199.684451IPR000315B-box-type zinc finger
CDDcd000211.94E-9739No hitNo description
PROSITE profilePS501199.2144794IPR000315B-box-type zinc finger
CDDcd000211.81E-75191No hitNo description
SMARTSM003361.35294IPR000315B-box-type zinc finger
PfamPF062034.4E-16372414IPR010402CCT domain
PROSITE profilePS5101714.852372414IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MGSSTAVACD FCGERTAVLF CRADSAKLCL PCDQHVHSAN LLSKKHVRSQ ICDNCSKEPV  60
SVRCFTDNLV LCQECDWDVH GSCSSASAHE RSAVEGFSGC PSVSELAAVW GIDLEGKKKD  120
DEDGEGEERL TDNFGMALDS WVSGSNNIVQ DLIVPYDMSM KKQSFSFGRS KQVVYRQLEE  180
LLKRGFVSGD GEGDGDGGGE IMVREGNNGG GSITQLSPTT SFTSLLLSAE YQSSCGNAAT  240
QLYAANHTTG HNNTQIWDFN LGKSRNPEEP SQFEPKDSTF TFNNVTHIKN DPHPTNLKAL  300
RDSYQDESIR TNSIKGQETS KSNNVPAAIH SHKSSNDSSD LHFTEHLVIP STNTTRLVVA  360
TNADLERMAQ NRDNAMQRYK EKKKTRRYDK TIRYETRKAR AETRLRVRGR FVKATDP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g007880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010413852.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 14-like isoform X2
SwissprotO228000.0COL14_ARATH; Zinc finger protein CONSTANS-LIKE 14
TrEMBLR0HT150.0R0HT15_9BRAS; Uncharacterized protein
STRINGXP_010413851.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38712647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.20.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]