PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa07g005590.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Nin-like

Protein Properties

Length: 932aa MW: 102868 Da PI: 5.2963

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa07g005590.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.6	3e-29	572	622	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++ Csa07g005590.1 572 EKNVSLNVLQQYFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV 622 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.2	556	642	IPR003035	RWP-RK domain
Pfam	PF02042	2.9E-27	574	622	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.7E-22	818	915	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.2E-22	826	909	No hit	No description
SMART	SM00666	2.5E-22	829	912	IPR000270	PB1 domain
PROSITE profile	PS51745	19.644	829	912	IPR000270	PB1 domain
CDD	cd06407	5.15E-33	830	911	No hit	No description
Pfam	PF00564	7.9E-17	830	911	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 932 aa Download sequence Send to blast
MENPSREKGF CFPDTPVEEM EMDGWVKSLI FEEDMLSSSF STSELMNFES FASWCNNSPS 60 PATDILFSQY GLSTSQSTTP FGGHSYVGEK RPVHEMSSQF HCLSDSEKIT GKRIKGNNTN 120 QTSSLTTGAV DYSVVPRSLS HTLDDKMIKA LSLFMEFSGE GILAQFWTPI KKGDQYMLST 180 CDQAYLLDSR LSGYREVSRN FTFSAEANQC SYPGLPGRVF ISGVTEWTSN VMYYKTAEYL 240 RMKHALDNDV RGSIAIPILE ASGSSCCAVL ELVTCREKPN FDVEMDSVCR ALQAVNLQTS 300 TIPRRQYLSS NQKEALAEIR DVLRAVCHAH RLPLALAWIP CSYSKGANNE LVKVYGKNSR 360 ETSLLCIEET ACYVNDMEME GYVNACLEHN LREGQGIVGK ALISNKPSFS SDVKTFNICE 420 YPLVQHARKF GLNAAVATKL RSTFTGDSDY ILEFFLPVSM KGSSEQQLLL DSLSNTMQRL 480 CRTLRTVSDA ESNEVMEVGF HGGETSNLPQ ATTSVSEESF QTTFLDTDVN STTSIFSNMS 540 SDKTNDIAGS QGTLQQEISG TKRAEKKKSS TEKNVSLNVL QQYFSGSLKD AAKSLGVCPT 600 TLKRICRQHG IMRWPSRKIN KVNRSLRKIQ TVLDSVQGVE GGLRFDSVTG EFVAVAPFVQ 660 EFDTQKSTSS HHEDVFVRSQ SDMDEDASLE PLKVKSYDGG GVKLEESVET NQAGPGSLME 720 PWAWISKQSG LNYSDDIDIG KRSEEVKKDK DVCVRRCLSS LALAGDGTNT RIERGNGIVE 780 PNQSISSSMS DSSNSSGAVL LGSSSTSMEQ NWNQLRTHNN SGESGSSSTL TVKATYRDDT 840 VRFKLDPYLV GCSQLYREVA KRFKLQEGAF RLKYLDDEEE WVMLVTDSDL HECFEILNSM 900 RKHTVKFLVS DLPSTAMGSS AGSNGCLGTG S*

Sequence ? help Back to Top

Protein Sequence Length: 932 aa Download sequence Send to blast

MENPSREKGF CFPDTPVEEM EMDGWVKSLI FEEDMLSSSF STSELMNFES FASWCNNSPS  60
PATDILFSQY GLSTSQSTTP FGGHSYVGEK RPVHEMSSQF HCLSDSEKIT GKRIKGNNTN  120
QTSSLTTGAV DYSVVPRSLS HTLDDKMIKA LSLFMEFSGE GILAQFWTPI KKGDQYMLST  180
CDQAYLLDSR LSGYREVSRN FTFSAEANQC SYPGLPGRVF ISGVTEWTSN VMYYKTAEYL  240
RMKHALDNDV RGSIAIPILE ASGSSCCAVL ELVTCREKPN FDVEMDSVCR ALQAVNLQTS  300
TIPRRQYLSS NQKEALAEIR DVLRAVCHAH RLPLALAWIP CSYSKGANNE LVKVYGKNSR  360
ETSLLCIEET ACYVNDMEME GYVNACLEHN LREGQGIVGK ALISNKPSFS SDVKTFNICE  420
YPLVQHARKF GLNAAVATKL RSTFTGDSDY ILEFFLPVSM KGSSEQQLLL DSLSNTMQRL  480
CRTLRTVSDA ESNEVMEVGF HGGETSNLPQ ATTSVSEESF QTTFLDTDVN STTSIFSNMS  540
SDKTNDIAGS QGTLQQEISG TKRAEKKKSS TEKNVSLNVL QQYFSGSLKD AAKSLGVCPT  600
TLKRICRQHG IMRWPSRKIN KVNRSLRKIQ TVLDSVQGVE GGLRFDSVTG EFVAVAPFVQ  660
EFDTQKSTSS HHEDVFVRSQ SDMDEDASLE PLKVKSYDGG GVKLEESVET NQAGPGSLME  720
PWAWISKQSG LNYSDDIDIG KRSEEVKKDK DVCVRRCLSS LALAGDGTNT RIERGNGIVE  780
PNQSISSSMS DSSNSSGAVL LGSSSTSMEQ NWNQLRTHNN SGESGSSSTL TVKATYRDDT  840
VRFKLDPYLV GCSQLYREVA KRFKLQEGAF RLKYLDDEEE WVMLVTDSDL HECFEILNSM  900
RKHTVKFLVS DLPSTAMGSS AGSNGCLGTG S*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa07g005590.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK220674	0.0	AK220674.1 Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL21-80-B11.
GenBank	BT010459	0.0	BT010459.1 Arabidopsis thaliana RWP-RK domain containing protein (At3g59580) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010413675.1	0.0	PREDICTED: protein NLP9-like
Swissprot	Q9M1B0	0.0	NLP9_ARATH; Protein NLP9
TrEMBL	R0FN83	0.0	R0FN83_9BRAS; Uncharacterized protein
STRING	XP_010413675.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein