PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g005050.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family SBP
Protein Properties Length: 872aa    MW: 97748.1 Da    PI: 6.7469
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g005050.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.56.9e-4248125178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +Cqve+C +dl+++k+yhrrhkvCe+hska+++lv g++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  Csa07g005050.1  48 ACQVENCGSDLTKVKDYHRRHKVCEMHSKATSALVGGIMQRFCQQCSRFHVLEEFDEGKRSCRRRLAGHNKRRRKANP 125
                     5**************************************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.8E-3443110IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.32546123IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.79E-3948128IPR004333Transcription factor, SBP-box
PfamPF031101.4E-3049122IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.202.0E-6638765IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.95E-7663764IPR020683Ankyrin repeat-containing domain
CDDcd002043.58E-7666764No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 872 aa     Download sequence    Send to blast
MDNMNKRRAV TVIPMDDDAP KLTLNLGGCG CGNIAKKTKL GGGLQTRACQ VENCGSDLTK  60
VKDYHRRHKV CEMHSKATSA LVGGIMQRFC QQCSRFHVLE EFDEGKRSCR RRLAGHNKRR  120
RKANPDTLGD GTPASDGQTS NYLLITLLKI LSNMHLNQSD QTGDQDLMSH LLKSLVSQAG  180
EHVGKNLVGL MQGGGGLEAS QALLSLEQAP REDIKHHSVN VLETPWQEVY PNCSEERAVL  240
DRSQKQVKMN AFDLNDVYID SDDTTDLERS SPPPTNPATS SLDYHQDSRQ SSPPQTSRNS  300
DSASDQSPSS SSRDAQSRTD RIVFKLFGKV PNDFPVALRG QILDWLAHTP TDMESYIRPG  360
CIVLTLCCDL SFSLRRLLDL SHDPLWTDGW IYLRVQNQFA FAFNGQVVLD TSLPLRSHDY  420
SQIITVRPLA VTRKAQFTVK GINLHRPGTR LLCAVEGTYL VQEATQGVME ESDDLKEHNE  480
TDSVKFSCEI PIASGRGFME IEDQGGISSS FFPFIVSEDE DVCSEIRRLE STLEFTGTDS  540
AMQAMYFIHE IGWLLHKSEV NSRLAESDHL FPLIRLESTL EFTGTDSAMQ AMYFIHEIGW  600
LLHKSEVNSR LAESDHLFPL IRFKFIIEFS MDREWCAVIK KLLNILFEEG TVDLSPDAAL  660
SELCLLHRAA RKNSKPMVEM LLRFIPKKKN LTLSGLFRPD ASGPAGLTPL HIAAGKDGSE  720
DVLDALTDDP GMIGIQAWKT SRNHTGFTPE DYARLRGHFS YIHLVQRKLN RKPTAEEHVV  780
VNIPESFNID HKQEKKSLND SSSLKINQCK LCDHKRVFVT RQHSSVAYRP AMLSMVAIAA  840
VCVCVALLFK SCPEVLYVFQ PFRWELLAYG TS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-3147122984squamosa promoter binding protein-like 4
1wj0_A3e-3149103660squamosa promoter-binding protein-like 12
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g005050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936580.0AB493658.1 Arabidopsis thaliana At3g60030 mRNA for hypothetical protein, partial cds, clone: RAAt3g60030.
GenBankAJ1320960.0AJ132096.1 Arabidopsis thaliana mRNA for squamosa promoter binding protein-like 12.
GenBankAY0910240.0AY091024.1 Arabidopsis thaliana At3g60030 mRNA sequence.
GenBankBT0038170.0BT003817.1 Arabidopsis thaliana clone C105276 putative squamosa promoter binding protein 12 (At3g60030) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019082923.10.0PREDICTED: LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 12
SwissprotQ9S7P50.0SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBLA0A178VGF00.0A0A178VGF0_ARATH; SPL12
STRINGXP_010469241.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30302764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.10.0squamosa promoter-binding protein-like 12
Publications ? help Back to Top
  1. Jung S, et al.
    Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes.
    BMC Genomics, 2006. 7: p. 81
    [PMID:16615871]
  2. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  3. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]