PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa07g003280.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Protein Properties

Length: 327aa MW: 36606.1 Da PI: 4.5169

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa07g003280.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.9	4.5e-19	62	150	1	97
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffkv+++ ++ + +p +f+e + + t +l+ + gr W+v + +k +++ ++t+GW++F+++++L +g+f++F +dg+++f v+ Csa07g003280.1 62 FFKVFVSQTAS--ESFAIPLSFIEFLADP--LPNTAKLQGTGGRDWTVSM--KKIRDGAYFTAGWSKFAQDHELVDGEFLTFVYDGNRTF--EVS 148 89999555554..458*****777655..889************..*******************************98888..777 PP EE CS B3 96 vf 97 vf Csa07g003280.1 149 VF 150 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	5.3E-22	59	154	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.73E-18	60	150	No hit	No description
Gene3D	G3DSA:2.40.330.10	6.9E-22	60	152	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	13.465	60	153	IPR003340	B3 DNA binding domain
SMART	SM01019	1.1E-19	62	153	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.7E-16	62	150	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.31E-7	227	318	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	9.4E-6	227	318	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.17	231	321	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
LTPFSFILTL SLSAIVTISH RRLYCIPLSL AQRPISTLPS SLASYISMAE PEHDDDVLFP 60 RFFKVFVSQT ASESFAIPLS FIEFLADPLP NTAKLQGTGG RDWTVSMKKI RDGAYFTAGW 120 SKFAQDHELV DGEFLTFVYD GNRTFEVSVF GRLGCKETRA EAETLELSGS SSDDSEEDEE 180 PSMDVDYDIS LGEDEEISQS LYPFEDEETE SDAAAVFEGN VDVKALTNPH FPTTLKNRNN 240 ELIIPASVVR ENELIFGDSV KYIDGEGTLV GLRGKWAVDT VCFKGWNRIC RRNRLKKHQD 300 TVECELLHDR EKMVHSIRVH VIRGTA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1yel_A	1e-21	61	155	10	104	At1g16640
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa07g003280.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010413386.1	0.0	PREDICTED: B3 domain-containing protein REM20-like isoform X1
Refseq	XP_010413387.1	0.0	PREDICTED: B3 domain-containing protein REM20-like isoform X2
Swissprot	Q8LAV5	1e-126	REM20_ARATH; B3 domain-containing protein REM20
TrEMBL	R0HPM7	1e-157	R0HPM7_9BRAS; Uncharacterized protein
STRING	XP_010413386.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1561	23	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53310.1	1e-122	B3 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]