PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa07g002770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 297aa MW: 32911.4 Da PI: 9.7065 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.3 | 8.2e-39 | 72 | 132 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+ss Csa07g002770.1 72 PQEKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSS 132 6899******************************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-30 | 71 | 130 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.5E-33 | 74 | 130 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.705 | 76 | 130 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 78 | 114 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009639 | Biological Process | response to red or far red light | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 297 aa Download sequence Send to blast |
MDATKWTQGF QEMINVKPME QMISNVSNNN TSQQQPTFIA TNTRPNATAS NGGSGGNNNS 60 TATTMETRKA RPQEKVNCPR CNSTNTKFCY YNNYSLTQPR YFCKGCRRYW TEGGSLRNVP 120 VGGSSRKNKR SSTHLASPSN PKLPDLNPPI LFSSQIPNKS KDLSLLSFPV MQDHHHALEL 180 LRSNGVSSRG MNTFLPGQMM DSNSVLYSSL GFPTMPDYKQ SNNNLSFSID HHQGIGHNTI 240 NNNQRAQDNN DDMNGASRIL FPFPDMKELS STTQEKGHGN NTYWSGMFSN TGGSSW* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa07g002770.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT033127 | 0.0 | BT033127.1 Arabidopsis thaliana unknown protein (At3g61850) mRNA, complete cds. | |||
GenBank | X97941 | 0.0 | X97941.2 A.thaliana mRNA for zinc finger protein DAG1 (BBFa). |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010413340.1 | 0.0 | PREDICTED: dof zinc finger protein DOF3.7 isoform X3 | ||||
Swissprot | Q43385 | 0.0 | DOF37_ARATH; Dof zinc finger protein DOF3.7 | ||||
TrEMBL | D7LSQ0 | 0.0 | D7LSQ0_ARALL; Uncharacterized protein | ||||
STRING | Cagra.0483s0060.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2528 | 26 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G61850.1 | 1e-173 | Dof family protein |