PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g002770.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Dof
Protein Properties Length: 297aa    MW: 32911.4 Da    PI: 9.7065
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g002770.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.38.2e-3972132262
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     ++++++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+ss
  Csa07g002770.1  72 PQEKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSS 132
                     6899******************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-3071130IPR003851Zinc finger, Dof-type
PfamPF027016.5E-3374130IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.70576130IPR003851Zinc finger, Dof-type
PROSITE patternPS01361078114IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009639Biological Processresponse to red or far red light
GO:0009845Biological Processseed germination
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDATKWTQGF QEMINVKPME QMISNVSNNN TSQQQPTFIA TNTRPNATAS NGGSGGNNNS  60
TATTMETRKA RPQEKVNCPR CNSTNTKFCY YNNYSLTQPR YFCKGCRRYW TEGGSLRNVP  120
VGGSSRKNKR SSTHLASPSN PKLPDLNPPI LFSSQIPNKS KDLSLLSFPV MQDHHHALEL  180
LRSNGVSSRG MNTFLPGQMM DSNSVLYSSL GFPTMPDYKQ SNNNLSFSID HHQGIGHNTI  240
NNNQRAQDNN DDMNGASRIL FPFPDMKELS STTQEKGHGN NTYWSGMFSN TGGSSW*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g002770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0331270.0BT033127.1 Arabidopsis thaliana unknown protein (At3g61850) mRNA, complete cds.
GenBankX979410.0X97941.2 A.thaliana mRNA for zinc finger protein DAG1 (BBFa).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010413340.10.0PREDICTED: dof zinc finger protein DOF3.7 isoform X3
SwissprotQ433850.0DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBLD7LSQ00.0D7LSQ0_ARALL; Uncharacterized protein
STRINGCagra.0483s0060.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25282673
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.11e-173Dof family protein