PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g002650.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 351aa    MW: 39863.2 Da    PI: 8.6128
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g002650.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.6e-13172222154
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +r +h ++Er+RR+++N+ ++ Lr llP +   + ++ + a+i+  A++Y+k L
  Csa07g002650.1 172 QRINHIAVERKRRRQMNEHISSLRGLLPLS---YIQRGDQASIVGGAINYVKVL 222
                     699***************************...9*****************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.08E-11170227No hitNo description
SuperFamilySSF474591.11E-16171240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.301171222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-10172222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-13173235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9177228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MRASFPRCFL QFSDRKGDVS SLQAQGFAEA QSFAIKEEEE SLQDTVPFLQ MLQSEDPSSF  60
FTIKEPNFLT LLSLQTVKEP WELERYPEFH SPVRFPSSAS SMEGTNQALS SQELFLSQAN  120
MTLPSSTSSP LTANPRRKRK TNNLLPQEMT REKRKRRKKT KPSKNIEEIE HQRINHIAVE  180
RKRRRQMNEH ISSLRGLLPL SYIQRGDQAS IVGGAINYVK VLEQIIQSLE TQKRRQQSSE  240
GNASNRLSGY SSNELWTTRE DQSCIPKIEA TVIQNHVSLK VECLKKQGQL LKGIVSLEQL  300
RLTVLHLNIA PSSHSSVSYS FQLKMEDDCE LESADEITAA VHQIFDIPTI *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136158RKRKTNNLLPQEMTREKRKRRKK
2137158KRKTNNLLPQEMTREKRKRRKK
3152157KRKRRK
4152158KRKRRKK
5180184RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g002650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304810.0AJ630481.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At3g61950.
GenBankAK1185270.0AK118527.1 Arabidopsis thaliana At3g61950 mRNA for putative bHLH transcription factor (bHLH067), complete cds, clone: RAFL19-75-M14.
GenBankBT0052980.0BT005298.1 Arabidopsis thaliana At3g61950 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010413325.10.0PREDICTED: transcription factor bHLH67-like
SwissprotQ700E41e-169BH067_ARATH; Transcription factor bHLH67
TrEMBLR0H7K90.0R0H7K9_9BRAS; Uncharacterized protein
STRINGXP_010413325.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61950.11e-170bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yu H,Murchie EH,González-Carranza ZH,Pyke KA,Roberts JA
    Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development.
    J. Exp. Bot., 2015. 66(5): p. 1543-52
    [PMID:25582452]