PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g002630.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 310aa    MW: 35230.2 Da    PI: 7.6265
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g002630.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3106.31.5e-3324129199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+kv tpsdv+k++rlv+pk++ae++       +++++++  l +ed+sg+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++d+ +
  Csa07g002630.1  24 FDKVVTPSDVGKLNRLVIPKQHAERYfpldnstSNDSNKGLLLNFEDRSGNSWRFRYSYWNSSQSYVMTKGWSRFVKDKNLDAGDIVSFQRDSGN 118
                     89****************************999666678899************************************************99888 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l++ ++r+
  Csa07g002630.1 119 KDKLYIDWRRR 129
                     999*****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-4312135IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-3221132IPR015300DNA-binding pseudobarrel domain
CDDcd100176.33E-2722118No hitNo description
PfamPF023629.2E-3124129IPR003340B3 DNA binding domain
SMARTSM010195.0E-2624130IPR003340B3 DNA binding domain
PROSITE profilePS5086314.69224130IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MMNQEEEKPI NEEASSSMER EHMFDKVVTP SDVGKLNRLV IPKQHAERYF PLDNSTSNDS  60
NKGLLLNFED RSGNSWRFRY SYWNSSQSYV MTKGWSRFVK DKNLDAGDIV SFQRDSGNKD  120
KLYIDWRRRP KIPDHHHHHH HHQASYHHQF AGAMFPRFYT FPHPQMPANY ESHNLYHRFH  180
QRDLGIGYYV RSMERSNPTA VIESVPVMMQ RRAQVAPRGE KRLRLFGVDM ECGGGGGGGS  240
VNSTEEESSS SGGSMPRGGV SMVGAGSLLQ LRLVSSDDES LVAMEAASLE DHHFFTKKGK  300
SSLSFDLDT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-62191323116B3 domain-containing transcription factor NGA1
5os9_B2e-62191323116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g002630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0851970.0AY085197.1 Arabidopsis thaliana clone 13757 mRNA, complete sequence.
GenBankFJ8737320.0FJ873732.1 Arabidopsis thaliana ecotype Landsberg erecta NGATHA2 (NGA2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010413323.10.0PREDICTED: B3 domain-containing transcription factor NGA2-like
SwissprotQ9M2680.0NGA2_ARATH; B3 domain-containing transcription factor NGA2
TrEMBLA0A384KUR30.0A0A384KUR3_ARATH; NGA2
TrEMBLC3VMM30.0C3VMM3_ARATH; NGATHA2
STRINGXP_010413323.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.11e-171B3 family protein
Publications ? help Back to Top
  1. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]