PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa07g002520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 370aa MW: 40466.7 Da PI: 5.9265 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.4 | 5.1e-08 | 188 | 229 | 9 | 55 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er+ R++iN+++ +L++llP+ K + ++L +A++Y+ +Lq Csa07g002520.1 188 ERKQRNDINKKLRTLQDLLPNY-----HKDDNESMLDEAINYMTNLQ 229 9********************7.....599**************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.284 | 179 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0012 | 187 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-12 | 187 | 246 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-10 | 188 | 240 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.92E-8 | 188 | 233 | No hit | No description |
Pfam | PF00010 | 6.1E-6 | 188 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MELVFENGQI LAKGQRSNVS IHNQRTKTIM DLYEAEYNED FMKSIIIHGD VIGVGGAIGD 60 TQVVPQDHVV AALPETTMLE TNKHVDDSTL IETLKSSSSK RVMVDYDNRK KIKFLPPDEQ 120 SVVAERTVGS GFDASSSAGF TEYSEGSTYL SSSLDDESDD ARPRRVPART RKALVKIKRN 180 AEAYDSPERK QRNDINKKLR TLQDLLPNYH KDDNESMLDE AINYMTNLQL QVQMMTMGNR 240 FVTPSMMLPL GSHYSQMGVA MGMGMQMGAS QFLPAPVLGA GLPGINNSAN TLTFLNHPGL 300 IMPMQNSAPP FTPTENCSRQ SVPPSCATFP NQIPNPTFLS NSDGATPYTR NQGPLTDGGI 360 LSVKKSGNP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa07g002520.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019093081.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: transcription factor PIF6-like | ||||
Swissprot | Q8L5W7 | 0.0 | PIF6_ARATH; Transcription factor PIF6 | ||||
TrEMBL | D7LSU3 | 0.0 | D7LSU3_ARALL; Uncharacterized protein | ||||
STRING | Bostr.13158s0214.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13423 | 14 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G62090.1 | 1e-165 | phytochrome interacting factor 3-like 2 |