PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa07g002290.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | WRKY | ||||||||
Protein Properties | Length: 227aa MW: 25346.7 Da PI: 6.3866 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 52.3 | 1.1e-16 | 89 | 127 | 21 | 59 |
-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 r+YYrCt++ C vkk+vers +dp+ v++tYeg+H h+ Csa07g002290.2 89 GRNYYRCTTTWCDVKKRVERSFSDPSSVITTYEGQHSHP 127 59************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.2E-15 | 83 | 129 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.18E-13 | 88 | 129 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.6E-8 | 90 | 128 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.2E-11 | 90 | 127 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 17.867 | 90 | 129 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MENAGAGVPF YDLGQTRVYP LFSDFHHLSA ERYPVGFMDL LGVHRHSLTH TPLMHFPTTT 60 PKSSSSEAVN EDHEKKRDNE EEXSFCLLGR NYYRCTTTWC DVKKRVERSF SDPSSVITTY 120 EGQHSHPRPV PKGDSLGFNG SASRAHFGLP TLPPQLLDYN NHQQQGQSSF GAGYIIRQEK 180 GSDDDDHDDP VVKKSRTRDL LDGAGSVKEH GLLQDVVSSH IIKDEC* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa07g002290.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF421155 | 1e-128 | AF421155.1 Arabidopsis thaliana WRKY transcription factor 68 (WRKY68) mRNA, complete cds. | |||
GenBank | AL162507 | 1e-128 | AL162507.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T12C14. | |||
GenBank | CP002686 | 1e-128 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010468965.1 | 1e-127 | PREDICTED: probable WRKY transcription factor 68 | ||||
Swissprot | Q93WV6 | 1e-104 | WRK68_ARATH; WRKY transcription factor 68 | ||||
TrEMBL | A0A178VDY3 | 1e-101 | A0A178VDY3_ARATH; WRKY transcription factor | ||||
STRING | XP_010468965.1 | 1e-127 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G62340.1 | 1e-105 | WRKY family protein |