PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g002290.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 288aa    MW: 32437.9 Da    PI: 7.2208
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g002290.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY62.86.1e-20121188159
                     ---SS-EEEEEEE-.....-TT-....SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKe.....vkgs....efprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGq        +g+    ++  +YYrCt++ C vkk+vers +dp+ v++tYeg+H h+
  Csa07g002290.1 121 LDDGYKWRKYGQNLsetalFQGNniklPNLLNYYRCTTTWCDVKKRVERSFSDPSSVITTYEGQHSHP 188
                     59**********86222224555232234579***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-23108190IPR003657WRKY domain
SuperFamilySSF1182901.7E-19114190IPR003657WRKY domain
PROSITE profilePS5081121.999116190IPR003657WRKY domain
SMARTSM007741.3E-22121189IPR003657WRKY domain
PfamPF031062.4E-16122188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MENAGAGVPF YDLGQTRVYP LFSDFHHLSA ERYPVGFMDL LGVHRHSLTH TPLMHFPTTT  60
PKSSSSEAVN EDHEKKRDNE EEXSFCLLGR DYRFKTTKTS EKTKLKVPKV SFITKSEVLN  120
LDDGYKWRKY GQNLSETALF QGNNIKLPNL LNYYRCTTTW CDVKKRVERS FSDPSSVITT  180
YEGQHSHPRP VPKGDSLGFN GSASRAHFGL PTLPPQLLDY NNHQQQGQSS FGAGYIIRQE  240
KGSDDDDHDD PVVKKSRTRD LLDGAGSVKE HGLLQDVVSS HIIKDEC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-181141911078Probable WRKY transcription factor 4
2lex_A6e-181141911078Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g002290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4211551e-128AF421155.1 Arabidopsis thaliana WRKY transcription factor 68 (WRKY68) mRNA, complete cds.
GenBankAL1625071e-128AL162507.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T12C14.
GenBankCP0026861e-128CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010418567.11e-166PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 68
SwissprotQ93WV61e-126WRK68_ARATH; WRKY transcription factor 68
TrEMBLR0HPI51e-139R0HPI5_9BRAS; Uncharacterized protein
STRINGXP_010418567.11e-165(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150681619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62340.11e-125WRKY family protein