PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g002070.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 331aa    MW: 36618.8 Da    PI: 5.181
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g002070.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-162471148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +grWT+eEd++l d+++  G g+W++ ++  g++R++k+c++rw +yl
   Csa07g002070.1 24 KGRWTAEEDQILSDYIQSNGEGSWRSLPKNAGLKRCGKSCRLRWINYL 71
                     79********************************************97 PP
2Myb_DNA-binding49.78.5e-1677122148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T++Ed+l+v+++  lG++ W+ Ia+ ++ gRt++++k++w+++l
   Csa07g002070.1  77 RGNITPQEDDLIVKLHSTLGSR-WSIIASNLP-GRTDNEIKNYWNSHL 122
                      7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-211574IPR009057Homeodomain-like
PROSITE profilePS5129416.2981971IPR017930Myb domain
SuperFamilySSF466892.25E-2821118IPR009057Homeodomain-like
SMARTSM007174.8E-122373IPR001005SANT/Myb domain
PfamPF002491.6E-142471IPR001005SANT/Myb domain
CDDcd001672.02E-92671No hitNo description
PROSITE profilePS5129424.12872126IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2475126IPR009057Homeodomain-like
SMARTSM007172.1E-1576124IPR001005SANT/Myb domain
PfamPF002493.0E-1477122IPR001005SANT/Myb domain
CDDcd001679.53E-1181122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGRAPCCEKR MGRAPCCEKV GMKKGRWTAE EDQILSDYIQ SNGEGSWRSL PKNAGLKRCG  60
KSCRLRWINY LRSDLKRGNI TPQEDDLIVK LHSTLGSRWS IIASNLPGRT DNEIKNYWNS  120
HLSRKLHGNF RKPTVTDVVE NAPLPPKRKP GRTSRSAMKP KFIPTSKNPK FVIKTNTNEM  180
VLPTTTIEIN GEGDKEDALM DLSSRSISGA KEPGLGPCGY GDDGYCTTSI NGDDGGLCIN  240
DDIFDACFPL NEPDAVHVSS FESNNVENSE PYGSSSASAG HENIESMADD FIDWDLGDEK  300
ESESRQKDSN DFGEPLDFEQ ENKMAAWLLS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-232212625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtModulates overall growth by reducing the proliferation activity of meristematic cells and delaying development (PubMed:18359753). Flavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1 (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:18359753, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g002070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196020.0AY519602.1 Arabidopsis thaliana MYB transcription factor (At3g62610) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010413268.10.0PREDICTED: transcription factor MYB12-like
SwissprotQ9LZK41e-171MYB11_ARATH; Transcription factor MYB11
TrEMBLR0FTY01e-173R0FTY0_9BRAS; Uncharacterized protein
STRINGXP_010413268.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62610.11e-162myb domain protein 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  3. Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
    The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors.
    Plant Physiol. Biochem., 2016. 102: p. 70-9
    [PMID:26913794]
  4. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  5. Camargo-Ramírez R,Val-Torregrosa B,San Segundo B
    MiR858-Mediated Regulation of Flavonoid-Specific MYB Transcription Factor Genes Controls Resistance to Pathogen Infection in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 190-204
    [PMID:29149328]