PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa06g054400.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

CO-like

Protein Properties

Length: 336aa MW: 37943.7 Da PI: 6.2849

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa06g054400.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17.8	6.7e-06	12	42	4	34
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeH 34 r C+ +++ + +C+ ++ lC C + H Csa06g054400.1 12 RLCDYCDSSVALVYCKADSAKLCLACDKQVH 42 68**************************999 PP
2	zf-B_box	19.5	2.1e-06	56	96	5	40
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.....Htvv 40 C+ +++ + +lfCe+ + lC++C ++H H+++ Csa06g054400.1 56 LCDSCHDSPSSLFCETERFVLCQNCDWQHHTAsstslHSRR 96 7**************************97744777777766 PP
3	CCT	60.3	6.6e-21	289	332	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ al+RYkeK+k+R++eK+irYesRK++AesR R++GrF+k+a Csa06g054400.1 289 RNSALSRYKEKKKSRRYEKHIRYESRKVRAESRTRIRGRFAKAA 332 899***************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	3.0E-14	9	56	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.485	9	56	IPR000315	B-box-type zinc finger
CDD	cd00021	1.13E-5	12	56	No hit	No description
PROSITE profile	PS50119	9.769	52	98	IPR000315	B-box-type zinc finger
CDD	cd00021	1.54E-7	56	97	No hit	No description
SMART	SM00336	0.92	57	98	IPR000315	B-box-type zinc finger
PROSITE profile	PS51017	14.743	289	331	IPR010402	CCT domain
Pfam	PF06203	8.2E-15	289	331	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MMEKEEEEGH RRLCDYCDSS VALVYCKADS AKLCLACDKQ VHVANQLFGK HFRSLLCDSC 60 HDSPSSLFCE TERFVLCQNC DWQHHTASST SLHSRRPFEG FTGCPSVPEL LSIVGLDDLS 120 PDSGLLWDQT PPEIISLNDL LVSGGSDTHN FRATDVPPLP KNRHATCGKY KDEMIRQLRG 180 RARSEPSCLK FEAASDAEID AGFQFLAPDL FPTCELESGM KWFDQQDEDF PYCSLLRNLS 240 GSVDKPENVD RDSSVMVPVA DSFNRCDENH VMVPLCSTTA TREINSLERN SALSRYKEKK 300 KSRRYEKHIR YESRKVRAES RTRIRGRFAK AADPI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa06g054400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493598	0.0	AB493598.1 Arabidopsis thaliana At2g47890 mRNA for hypothetical protein, partial cds, clone: RAAt2g47890.
GenBank	BT023413	0.0	BT023413.1 Arabidopsis thaliana At2g47890 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010518506.2	0.0	PREDICTED: zinc finger protein CONSTANS-LIKE 13
Swissprot	O82256	0.0	COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13
TrEMBL	R0FWW4	0.0	R0FWW4_9BRAS; Uncharacterized protein
STRING	XP_010518506.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8148	27	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47890.1	0.0	B-box type zinc finger protein with CCT domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]