PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g054340.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NF-YB
Protein Properties Length: 155aa    MW: 17438.6 Da    PI: 6.7888
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g054340.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB172.74e-5443138297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wa+a+lGf+dy+ +lk+yl++yr +ege
  Csa06g054340.1  43 KEQDRLLPIANVGRIMKNILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWAMANLGFDDYAGQLKKYLHRYRVVEGE 137
                     89*******************************************************************************************99 PP

           NF-YB  97 k 97 
                     k
  Csa06g054340.1 138 K 138
                     7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.9E-5236145IPR009072Histone-fold
SuperFamilySSF471136.06E-4045151IPR009072Histone-fold
PfamPF008085.4E-2848112IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006159.5E-187694No hitNo description
PROSITE patternPS0068507995IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006159.5E-1895113No hitNo description
PRINTSPR006159.5E-18114132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MAGDNPWFQN PIQNYNFGSS SSHDRHGLVV EDQQQEENMM MIKEQDRLLP IANVGRIMKN  60
ILPPNAKISK EAKETMQECV SEFISFVTGE ASDKCHKEKR KTVNGDDICW AMANLGFDDY  120
AGQLKKYLHR YRVVEGEKAN HHGKGGPNKS SPDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B8e-4442132191Transcription factor HapC (Eurofung)
4g92_B8e-4442132191Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g054340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0053091e-144AC005309.3 Arabidopsis thaliana chromosome 2 clone F17A22 map CIC06C03, complete sequence.
GenBankBT0039681e-144BT003968.1 Arabidopsis thaliana clone RAFL15-27-K05 (R20859) putative CCAAT-box binding trancription factor (At2g47810) mRNA, complete cds.
GenBankBT0050811e-144BT005081.1 Arabidopsis thaliana clone U20859 putative CCAAT-box binding trancription factor (At2g47810) mRNA, complete cds.
GenBankCP0026851e-144CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010518498.11e-114PREDICTED: nuclear transcription factor Y subunit B-5-like
SwissprotO822486e-92NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLV4LI059e-90V4LI05_EUTSA; Uncharacterized protein
STRINGXP_010518498.11e-114(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.13e-94nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]