PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g054060.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 252aa    MW: 28686.3 Da    PI: 10.3692
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g054060.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.12.8e-205199355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    y+G+r+++ +g+W+AeIrdp++    +r++lg+f taeeAa+a++ a+ k++g
  Csa06g054060.1 51 YRGIRQRP-WGKWAAEIRDPRK---GTRVWLGTFKTAEEAARAYDVAAIKIRG 99
                    9*******.**********954...4*************************98 PP
2AP264.12.8e-20124172355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+G+r+++ +g+W+AeIrdp++    +r++lg+f taeeAa+a++ a+ k++g
  Csa06g054060.1 124 YRGIRQRP-WGKWAAEIRDPRK---GTRVWLGTFKTAEEAARAYDVAAIKIRG 172
                     9*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.2E-3450108IPR001471AP2/ERF domain
SMARTSM003808.9E-4150113IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-2350108IPR016177DNA-binding domain
PROSITE profilePS5103225.10650107IPR001471AP2/ERF domain
PRINTSPR003673.8E-125162IPR001471AP2/ERF domain
PfamPF008476.3E-145199IPR001471AP2/ERF domain
CDDcd000183.04E-3251109No hitNo description
PRINTSPR003673.8E-127389IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-23123181IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.2E-34123181IPR001471AP2/ERF domain
SMARTSM003802.0E-41123186IPR001471AP2/ERF domain
PROSITE profilePS5103225.106123180IPR001471AP2/ERF domain
CDDcd000183.04E-32124182No hitNo description
PfamPF008476.3E-14124172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MCGGAVISDF IWSKSSFAES QAGSVSNNKK RKPVSGVGGQ RDGKRERKNL YRGIRQRPWG  60
KWAAEIRDPR KGTRVWLGTF KTAEEAARAY DVAAIKIRGQ KAKLNFPNTI GGQRDGKRER  120
KNLYRGIRQR PWGKWAAEIR DPRKGTRVWL GTFKTAEEAA RAYDVAAIKI RGQKAKLNFP  180
NTSIISDTNQ KEMISENHQV ESLLSEEEEE LMAFEDYMRF YQIPFLDDQS TTDLGNLWSF  240
QEEEDSLTTK S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-23511811573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g054060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0746451e-88AY074645.1 Arabidopsis thaliana At2g47520/T30B22.18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019102008.10.0PREDICTED: ethylene-responsive transcription factor ERF071-like
SwissprotO222591e-67ERF71_ARATH; Ethylene-responsive transcription factor ERF071
TrEMBLR0G1V41e-72R0G1V4_9BRAS; Uncharacterized protein
STRINGXP_010518456.13e-90(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.13e-56ERF family protein
Publications ? help Back to Top
  1. Gasch P, et al.
    Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
    Plant Cell, 2016. 28(1): p. 160-80
    [PMID:26668304]
  2. Yao Y,Chen X,Wu AM
    ERF-VII members exhibit synergistic and separate roles in Arabidopsis.
    Plant Signal Behav, 2017. 12(6): p. e1329073
    [PMID:28537474]
  3. Eysholdt-Derzsó E,Sauter M
    Root Bending Is Antagonistically Affected by Hypoxia and ERF-Mediated Transcription via Auxin Signaling.
    Plant Physiol., 2017. 175(1): p. 412-423
    [PMID:28698356]
  4. Eysholdt-Derzsó E,Sauter M
    Hypoxia and the group VII ethylene response transcription factor HRE2 promote adventitious root elongation in Arabidopsis.
    Plant Biol (Stuttg), 2019. 21 Suppl 1: p. 103-108
    [PMID:29996004]