PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa06g054000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB | ||||||||
Protein Properties | Length: 358aa MW: 39466 Da PI: 5.653 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.8e-16 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEd++l ++++ G g+W++ ++ g++R++k+c++rw +yl Csa06g054000.1 8 RGRWTAEEDQILSNYIQSNGEGSWRSLPKNAGLKRCGKSCRLRWINYL 55 8*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.3 | 1.3e-16 | 61 | 106 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++ E+el v+++ lG++ W++Ia++++ gRt++++k++w+++l Csa06g054000.1 61 RGNISPKEEELVVKLHSTLGNR-WSLIASHLP-GRTDNEIKNYWNSHL 106 7899******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-20 | 1 | 58 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.114 | 3 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.61E-28 | 5 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.5E-12 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-14 | 8 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.10E-9 | 10 | 55 | No hit | No description |
PROSITE profile | PS51294 | 25.215 | 56 | 110 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-25 | 59 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-16 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.3E-15 | 61 | 106 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.36E-11 | 65 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
CEKVGIKRGR WTAEEDQILS NYIQSNGEGS WRSLPKNAGL KRCGKSCRLR WINYLRSDLK 60 RGNISPKEEE LVVKLHSTLG NRWSLIASHL PGRTDNEIKN YWNSHLSRKL HNFIRKPSNS 120 QDVAAVIMNA SSAPDAKRRL GRTSRSAMKP KTHGTIKTRK TKKTPAAPPG PNADVAVAEE 180 GAVMVELSGA KAELGPCDYY GDYCNKNLVS INGVLSFDDD ITDLLLDESD PGHIYTSCGG 240 EAELNSIIRV SEGARGICSE SSSQGKLDCL QSCPSVDSFL NYDHQVNDAL TDEFIDWDCV 300 WQQGSNNRWH EKEGADSMVS WLLDGDDDAT IGKSNCENLG EPLDHDDENA LVAWLLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-22 | 6 | 110 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Flavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1. Controls flavonol biosynthesis mainly in the root (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:15923334, ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa06g054000.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen deficiency, sucrose and UV LIGHT (PubMed:17053893, PubMed:9839469). Triggered by HY5 in response to light and UV-B (PubMed:19895401). {ECO:0000269|PubMed:17053893, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY060588 | 0.0 | AY060588.1 Arabidopsis thaliana At2g47460/T30B22.24 mRNA, complete cds. | |||
GenBank | AY142067 | 0.0 | AY142067.1 Arabidopsis thaliana At2g47460/T30B22.24 mRNA, complete cds. | |||
GenBank | AY519580 | 0.0 | AY519580.1 Arabidopsis thaliana MYB transcription factor (At2g47460) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010518446.1 | 0.0 | PREDICTED: transcription factor MYB12-like, partial | ||||
Swissprot | O22264 | 0.0 | MYB12_ARATH; Transcription factor MYB12 | ||||
TrEMBL | D7LGN2 | 0.0 | D7LGN2_ARALL; Uncharacterized protein | ||||
STRING | XP_010518446.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 0.0 | myb domain protein 12 |