PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g053720.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 276aa    MW: 31470.8 Da    PI: 6.2361
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g053720.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.8e-172168148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed +lv+ v  +G  +W+ Iar  g++Rt+k+c++rw++yl
   Csa06g053720.1 21 KGPWTEKEDAILVNFVSVHGDARWNHIARSSGLKRTGKSCRLRWLNYL 68
                     79********************************************97 PP

2Myb_DNA-binding46.87e-1574117146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE+  +++++ ++G++ W++Ia++++ gRt++++k++w++
   Csa06g053720.1  74 RGNITLEEQFMILKLHSLWGNR-WSKIAQYLP-GRTDNEIKNYWRT 117
                      7899******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.7651672IPR017930Myb domain
SuperFamilySSF466894.49E-3018115IPR009057Homeodomain-like
SMARTSM007171.8E-142070IPR001005SANT/Myb domain
PfamPF002493.3E-152168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-222275IPR009057Homeodomain-like
CDDcd001673.56E-112368No hitNo description
PROSITE profilePS5129418.09873123IPR017930Myb domain
SMARTSM007171.1E-1373121IPR001005SANT/Myb domain
PfamPF002491.8E-1374117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-2276122IPR009057Homeodomain-like
CDDcd001671.52E-1078117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MEDYERNSNS PTHEDDSDVR KGPWTEKEDA ILVNFVSVHG DARWNHIARS SGLKRTGKSC  60
RLRWLNYLRP DVRRGNITLE EQFMILKLHS LWGNRWSKIA QYLPGRTDNE IKNYWRTRVQ  120
KQAKHLRCDV NSNLFKETMR NVWMPRLVER INAQSSSATC EQVESMMIAD PGQPIDVPSP  180
GEPGYVQFNP HHHNQQQFLP ATEISATSSN SPAETLSDVQ GGAVNGSGYD PVGQTGFGEF  240
NDWGCVGGNN MWTNDESLWF LQDQFCHETT SYSYN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25181234108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g053720.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2291400.0AK229140.1 Arabidopsis thaliana mRNA for MYB transcription factor, complete cds, clone: RAFL16-42-L19.
GenBankAY5195790.0AY519579.1 Arabidopsis thaliana MYB transcription factor (At2g47190) mRNA, complete cds.
GenBankBT0109490.0BT010949.1 Arabidopsis thaliana At2g47190 gene, complete cds.
GenBankBT0116560.0BT011656.1 Arabidopsis thaliana At2g47190 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010518412.10.0PREDICTED: transcription factor MYB108-like
SwissprotQ10MB42e-75MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A1J3HWJ20.0A0A1J3HWJ2_NOCCA; Uncharacterized protein
STRINGXP_010518412.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47190.11e-178myb domain protein 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]