PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa06g053110.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Dof

Protein Properties

Length: 321aa MW: 35244.6 Da PI: 7.7574

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa06g053110.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	58.9	1.1e-18	78	109	4	35
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCka 35 ++++cprC+stntkfCyynnysl+qPryfCk Csa06g053110.1 78 EKINCPRCNSTNTKFCYYNNYSLTQPRYFCKD 109 789***************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-13	75	108	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.7E-15	79	109	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	16.311	80	134	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MDATNWTQGF QEMMNVKPMD QIMIPNNSTH QSNTASNARP NAILTSNGVS AAGTTVSGVS 60 NNNNNTAVVA ERKARPLEKI NCPRCNSTNT KFCYYNNYSL TQPRYFCKDL NPPILFSNQI 120 HNKSKGSSQD LNLLSFPVMQ DQHHHYHVHM SQFLQMPKME GNGNITHQQP SSSSSLYGSS 180 SSPASALELL RTGVNVSSRS GINSFMPPGP MMDSNTVLYT SSGFPTMVDY KPSNLSFSTD 240 QQGLGHNNNN RSEAHNDHHQ GRVLFPFGDQ MKELSSSITQ EVDHHDNQQQ KSHGNNNNNS 300 SPSNGYWSGM FSTTGGGSSW *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa06g053110.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC006418	0.0	AC006418.4 Arabidopsis thaliana chromosome 2 clone F13A10 map CIC06C03, complete sequence.
GenBank	AJ237810	0.0	AJ237810.1 Arabidopsis thaliana dag2 gene, exons 1-2.
GenBank	BT003328	0.0	BT003328.1 Arabidopsis thaliana putative DOF zinc finger protein (At2g46590) mRNA, complete cds.
GenBank	BT008842	0.0	BT008842.1 Arabidopsis thaliana At2g46590 mRNA, complete cds.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006294447.1	0.0	dof zinc finger protein DOF2.5 isoform X1
Swissprot	Q9ZPY0	0.0	DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBL	R0HPY2	0.0	R0HPY2_9BRAS; Uncharacterized protein
STRING	XP_006294447.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2528	26	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46590.2	1e-154	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]