PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g052360.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family BES1
Protein Properties Length: 688aa    MW: 76548.2 Da    PI: 6.5717
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g052360.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822153.41.7e-47642081139
          DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl..eeaeaagssas..a 88 
                     ggs+r+++ +E+E++k+RER+RRai+a+i+ GLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++   +g+kp+  ++a aagssas  a
  Csa06g052360.1  64 GGSRRSRPLEEKERTKLRERHRRAITARILGGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsksQGTKPPggSSAVAAGSSAShiA 158
                     689******************************************************************98889999999878888888888555 PP

          DUF822  89 spesslqsslkssalaspvesysaspksssfpspssldsislasaasllpv 139
                     s+++s   +l+  + +spve +s+++k +  p ps +d  +++s++ + +v
  Csa06g052360.1 159 SQQTSPP-ALRVVSSRSPVELSSCRMKGVFAPGPSPYDIPPTQSPELVGSV 208
                     5666655.77777889***********************999988555444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056875.4E-4065188IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514453.99E-172239684IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.3E-185242684IPR013781Glycoside hydrolase, catalytic domain
PfamPF013736.7E-94248668IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.9E-64279293IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.9E-64300318IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.9E-64322343IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060326334IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR007508.9E-64415437IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.9E-64488507IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.9E-64522538IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.9E-64539550IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.9E-64557580IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.9E-64597619IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MATDMHKLLG TSEEDDDEDM DMDVKEEDDD HRNRGTTRAG SGSSNEEFMF QQSMQDQVGT  60
PGGGGSRRSR PLEEKERTKL RERHRRAITA RILGGLRRHG NYNLRVRADI NDVIAALARE  120
AGWVVLPDGT TFPSKSQGTK PPGGSSAVAA GSSASHIASQ QTSPPALRVV SSRSPVELSS  180
CRMKGVFAPG PSPYDIPPTQ SPELVGSVNK GDGLAGCSVD VINSKQILEI PSNLTEQDFS  240
GTPYVPVYVM LPLGVINMKC ELADRDGLLK HLRILKSIHV DGVKVDCWWG IVEGHSPQEY  300
NWNGYRQLFQ MVRDLNLKIQ VLMSFHECGG NVGDDVCIPL PHWVAEIGRT NPDIYFTDRE  360
GRRNPECLSW GIDKERILRG RTALEVYFDY MRSFRIELAE FVEDGVISMV EIGLGPCGEL  420
RYPSCPIKHG WRYPGVGEFQ CYDKYLLKSL RKAADSRGHL FWARGPDNTG SYNSQPQGTG  480
FFCDGGDFDG LYGRFFLKWY SQVLIDHADH ILSLAKLVFS SSCIAAKLPD VHWWYKTASH  540
AAELTAGFYN PSNRDGYAAI ASTLKKHGAT LSFVSGEVQV LNRPDDFSGA LGEPEAVAWQ  600
VLNAAWDSDT PIARENSLPC HDRVGYNKML ESVKFPNDPD RRHLSSFAYS RLIPALMEGH  660
NIVEFERFVK KLHGETVMNH HHHHQQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-13824467511444Beta-amylase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g052360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2273230.0AK227323.1 Arabidopsis thaliana mRNA for putative beta-amylase, complete cds, clone: RAFL14-01-P19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010518231.10.0PREDICTED: beta-amylase 7-like
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLR0HB940.0R0HB94_9BRAS; Beta-amylase
STRINGXP_010518231.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29452535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]