PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa06g051870.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GRF

Protein Properties

Length: 438aa MW: 49376.6 Da PI: 8.9356

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa06g051870.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	72.6	4.6e-23	88	132	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++ep rCrRtDGKkWRCs+rvl +k+CErH+hrgr+rsrk +e+ Csa06g051870.1 88 EPEPTRCRRTDGKKWRCSNRVLLYEKYCERHMHRGRKRSRKLVES 132 69***************************************9986 PP
2	WRC	65.9	5.6e-21	314	352	1	39
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrs 39 d+epgrCrRtDGK+WRCs++vl+g+k+C++H+hrg +++ Csa06g051870.1 314 DKEPGRCRRTDGKRWRCSKDVLSGQKYCDKHMHRGIKKK 352 689********************************8876 PP
3	QLQ	31.8	4.5e-12	22	57	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++ aaQ+ ++ +Q l+y+y+ a++ vP++L++ i++ Csa06g051870.1 22 WMKAAQFVEFQMQTLVYRYIEAGLRVPHHLVVSIWN 57 789*******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	0.0034	21	57	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	12.532	22	57	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	23.967	88	132	IPR014977	WRC domain
Pfam	PF08879	2.6E-19	89	131	IPR014977	WRC domain
PROSITE profile	PS51667	21.42	314	358	IPR014977	WRC domain
Pfam	PF08879	2.1E-17	316	353	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MQSPKMEQDE ELEERRRKKW PWMKAAQFVE FQMQTLVYRY IEAGLRVPHH LVVSIWNSLA 60 LSSSSNYNSP SSSLLSSDKG LNHIHTVEPE PTRCRRTDGK KWRCSNRVLL YEKYCERHMH 120 RGRKRSRKLV ESSYKVASSS ASLTKHDNTY GLDINNDSES VLLHETMSGS SNAQVVTIAS 180 LPSARACDNV IRPSLVISES TKESVSHGDR SRRNMEMSYD DLISKKESSM CVSVVPLQGD 240 ESLPSVQKFF PEVSDSSLQG AQFSGNRKNE IIARSREWKN MNVVNGGLFH SIHFSQDTVL 300 QDRGGFRLQR VETDKEPGRC RRTDGKRWRC SKDVLSGQKY CDKHMHRGIK KKHPVDTTIA 360 HENAGYSPLT VKTAARSVTC KDGDDQKLSL LVMGIPLPRV SDEKTTSSCS TDTTITDIAL 420 RGEEDNEEIL SLFSSGV*

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MQSPKMEQDE ELEERRRKKW PWMKAAQFVE FQMQTLVYRY IEAGLRVPHH LVVSIWNSLA  60
LSSSSNYNSP SSSLLSSDKG LNHIHTVEPE PTRCRRTDGK KWRCSNRVLL YEKYCERHMH  120
RGRKRSRKLV ESSYKVASSS ASLTKHDNTY GLDINNDSES VLLHETMSGS SNAQVVTIAS  180
LPSARACDNV IRPSLVISES TKESVSHGDR SRRNMEMSYD DLISKKESSM CVSVVPLQGD  240
ESLPSVQKFF PEVSDSSLQG AQFSGNRKNE IIARSREWKN MNVVNGGLFH SIHFSQDTVL  300
QDRGGFRLQR VETDKEPGRC RRTDGKRWRC SKDVLSGQKY CDKHMHRGIK KKHPVDTTIA  360
HENAGYSPLT VKTAARSVTC KDGDDQKLSL LVMGIPLPRV SDEKTTSSCS TDTTITDIAL  420
RGEEDNEEIL SLFSSGV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	121	128	GRKRSRKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000269\|PubMed:21036927}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa06g051870.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010518166.1	0.0	PREDICTED: growth-regulating factor 9-like isoform X2
Swissprot	Q8S9M3	0.0	GRF9_ARATH; Growth-regulating factor 9
TrEMBL	D7LCJ7	0.0	D7LCJ7_ARALL; At2g45480/F4L23.1
STRING	XP_010518165.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13760	20	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45480.1	0.0	growth-regulating factor 9

Publications ? help Back to Top
Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]