PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa06g051300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 278aa MW: 30608.2 Da PI: 9.4017 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.5 | 2.4e-18 | 119 | 173 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k Csa06g051300.1 119 RKKLRLSKEQALVLEETFKEHSTLNPKQKLALAKQLNLRARQVEVWFQNRRARTK 173 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 123.8 | 8e-40 | 119 | 208 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq+ +LEe+F+e+++L+p++K +la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+een+rL+kev+eLr +l Csa06g051300.1 119 RKKLRLSKEQALVLEETFKEHSTLNPKQKLALAKQLNLRARQVEVWFQNRRARTKLKQTEVDCEYLKRCCDNLTEENRRLQKEVSELR-AL 208 69*************************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 3.8E-22 | 8 | 83 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 3.9E-19 | 97 | 173 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.2E-18 | 103 | 176 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.232 | 115 | 175 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.8E-15 | 117 | 179 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.2E-16 | 119 | 173 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.55E-15 | 119 | 176 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 150 | 173 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.4E-11 | 175 | 209 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 2.9E-26 | 175 | 218 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MHNQINNSHP QKIHHNSWTH LFQSSGIKRT TTERNSDAGS FLRGFDVNRA ASSVVAVVNL 60 EEEAAVVSSP NSTISSVSGN KRDLAAARGG GEEHEAERAS CSHGGGSDDE DCGNGDGSRK 120 KLRLSKEQAL VLEETFKEHS TLNPKQKLAL AKQLNLRARQ VEVWFQNRRA RTKLKQTEVD 180 CEYLKRCCDN LTEENRRLQK EVSELRALKL SPHLYMHMTP PTTLTMCPSC ERVSSSSSSA 240 NVTAVLPPPA TVVGRPSPQR STPWTAISLQ QVQRSGR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 117 | 123 | SRKKLRL |
2 | 167 | 175 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa06g051300.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By transition from light to far-red light. {ECO:0000269|PubMed:8106086}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493589 | 0.0 | AB493589.1 Arabidopsis thaliana At2g44910 mRNA for hypothetical protein, partial cds, clone: RAAt2g44910. | |||
GenBank | AJ441251 | 0.0 | AJ441251.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein ATHB4 (Athb4 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019101993.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-4-like, partial | ||||
Swissprot | P92953 | 1e-152 | ATHB4_ARATH; Homeobox-leucine zipper protein ATHB-4 | ||||
TrEMBL | R0FX19 | 1e-176 | R0FX19_9BRAS; Uncharacterized protein | ||||
STRING | XP_010413054.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2577 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44910.1 | 1e-103 | homeobox-leucine zipper protein 4 |
Publications ? help Back to Top | |||
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