PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa06g049730.2

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Nin-like

Protein Properties

Length: 937aa MW: 103466 Da PI: 5.5767

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa06g049730.2	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.5	2.8e-28	589	639	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl+ l+++Fs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++ Csa06g049730.2 589 EKNVSLSILQQHFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV 639 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.699	578	659	IPR003035	RWP-RK domain
Pfam	PF02042	2.6E-27	591	639	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.04E-23	825	922	No hit	No description
Gene3D	G3DSA:3.10.20.240	9.4E-23	834	915	No hit	No description
PROSITE profile	PS51745	22.773	836	918	IPR000270	PB1 domain
SMART	SM00666	2.1E-23	836	918	IPR000270	PB1 domain
CDD	cd06407	4.31E-38	837	917	No hit	No description
Pfam	PF00564	9.1E-18	839	917	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 937 aa Download sequence Send to blast
MENPFASREK GFGYQDVPTE QMDGFSTSFG SGVRSLIPDD LLNSSSELLN FDSFAAWCNT 60 PSAADIFFSQ YGLLNSQPMP FGAFTSFHAA DFPKATSLTR SFHDLETSYF GEETSLVPEM 120 SSLLHRSLDN DVLSGKRRRV NNNQKIGFPD VLNCTIPRSL SHSLDEKMLK ALSLFMESSG 180 SGEGILAQVW TPIKIGDQYV LSTCDQAYLL DPRLSQYREV SRKFTFAAEA NQRSFPGLPG 240 RVFISGVPEW TSNVMYYKTD EYLRMKHAID NEVRGSIAIP VLEASGTSCC AVMEFVTSKQ 300 KPNFHMEMDS VCRALQAVNL RTSTIPRPQY LSNNQRVALA EIQDVLRAVS HAHKLPLALA 360 WIPCRKDQSI RVPGPNSGEK CVLCIEETAC YVNDMEMEGF VHACLEHCLR EKEGIVGKAF 420 ISNQPFFSSD VKAYDISEYP LVQHARKYGL NAAVAIKLRS TYTGEDDYIL ELFLPVSMKG 480 SSEQQLLLDS LSGTMQRICR TLRTVSEVGS TKKEVTNPGI QSGEMSNFPQ TTCLANLQTT 540 SLDSEYNSTR SIFSGMSSDK DNGITVSQGI LEQDISKART PEKKKSTTEK NVSLSILQQH 600 FSGSLKDAAK SLGVCPTTLK RICRQHGIMR WPSRKINKVN RSLRKIQTVL DSVQGVEGGL 660 KFDSATGEFI AVGPFIQEFD TQKGLLSHIN DTHARKSQED MTDDTSFKLQ EGKSVDNAVK 720 LEEDITMNHE SPGSFMEVNA SGQPWDWMVE QSGLNGSEGI NSVCNLISLA ISDGMDPTTR 780 YSGSIVEPNH SLSCSISDSS NGSGAVMRGS SSTSVEDWNQ MRSHNNNSGG ESGSTTLIVK 840 ATYREDTVRF KFEPSVGCSQ LYKEVGKRFK LQDGSFQLKY LDDEEEWVML VTDSDLQECL 900 EILYGLGKHS VKFMVRDLPP PIGSSAGSNG YLGTCL*

Sequence ? help Back to Top

Protein Sequence Length: 937 aa Download sequence Send to blast

MENPFASREK GFGYQDVPTE QMDGFSTSFG SGVRSLIPDD LLNSSSELLN FDSFAAWCNT  60
PSAADIFFSQ YGLLNSQPMP FGAFTSFHAA DFPKATSLTR SFHDLETSYF GEETSLVPEM  120
SSLLHRSLDN DVLSGKRRRV NNNQKIGFPD VLNCTIPRSL SHSLDEKMLK ALSLFMESSG  180
SGEGILAQVW TPIKIGDQYV LSTCDQAYLL DPRLSQYREV SRKFTFAAEA NQRSFPGLPG  240
RVFISGVPEW TSNVMYYKTD EYLRMKHAID NEVRGSIAIP VLEASGTSCC AVMEFVTSKQ  300
KPNFHMEMDS VCRALQAVNL RTSTIPRPQY LSNNQRVALA EIQDVLRAVS HAHKLPLALA  360
WIPCRKDQSI RVPGPNSGEK CVLCIEETAC YVNDMEMEGF VHACLEHCLR EKEGIVGKAF  420
ISNQPFFSSD VKAYDISEYP LVQHARKYGL NAAVAIKLRS TYTGEDDYIL ELFLPVSMKG  480
SSEQQLLLDS LSGTMQRICR TLRTVSEVGS TKKEVTNPGI QSGEMSNFPQ TTCLANLQTT  540
SLDSEYNSTR SIFSGMSSDK DNGITVSQGI LEQDISKART PEKKKSTTEK NVSLSILQQH  600
FSGSLKDAAK SLGVCPTTLK RICRQHGIMR WPSRKINKVN RSLRKIQTVL DSVQGVEGGL  660
KFDSATGEFI AVGPFIQEFD TQKGLLSHIN DTHARKSQED MTDDTSFKLQ EGKSVDNAVK  720
LEEDITMNHE SPGSFMEVNA SGQPWDWMVE QSGLNGSEGI NSVCNLISLA ISDGMDPTTR  780
YSGSIVEPNH SLSCSISDSS NGSGAVMRGS SSTSVEDWNQ MRSHNNNSGG ESGSTTLIVK  840
ATYREDTVRF KFEPSVGCSQ LYKEVGKRFK LQDGSFQLKY LDDEEEWVML VTDSDLQECL  900
EILYGLGKHS VKFMVRDLPP PIGSSAGSNG YLGTCL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	139	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa06g049730.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC002335	0.0	AC002335.3 Arabidopsis thaliana chromosome 2 clone T1O24 map CIC10F02, complete sequence.
GenBank	AY102562	0.0	AY102562.1 Arabidopsis thaliana hypothetical protein (At2g43500/T1O24.24) mRNA, complete cds.
GenBank	AY102563	0.0	AY102563.1 Arabidopsis thaliana hypothetical protein (At2g43500/T1O24.24) mRNA, complete cds.
GenBank	AY649251	0.0	AY649251.1 Arabidopsis thaliana hypothetical protein (At2g43500) gene, complete cds.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010517916.1	0.0	PREDICTED: protein NLP8-like isoform X1
Refseq	XP_010517917.1	0.0	PREDICTED: protein NLP8-like isoform X1
Refseq	XP_010517918.1	0.0	PREDICTED: protein NLP8-like isoform X1
Refseq	XP_010517919.1	0.0	PREDICTED: protein NLP8-like isoform X1
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	R0FUG6	0.0	R0FUG6_9BRAS; Uncharacterized protein
STRING	XP_010517916.1	0.0	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]