PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa06g049730.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Nin-like

Protein Properties

Length: 960aa MW: 105902 Da PI: 5.344

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa06g049730.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.4	2.8e-28	612	662	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl+ l+++Fs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++ Csa06g049730.1 612 EKNVSLSILQQHFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV 662 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.699	601	682	IPR003035	RWP-RK domain
Pfam	PF02042	2.7E-27	614	662	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.14E-23	848	945	No hit	No description
Gene3D	G3DSA:3.10.20.240	9.7E-23	857	938	No hit	No description
PROSITE profile	PS51745	22.773	859	941	IPR000270	PB1 domain
SMART	SM00666	2.1E-23	859	941	IPR000270	PB1 domain
CDD	cd06407	4.45E-38	860	940	No hit	No description
Pfam	PF00564	9.4E-18	862	940	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 960 aa Download sequence Send to blast
MENPFASREK GFGYQDVPTE QMDGFSTSFG SGVRSLIPDD LLNSSSELLN FDSFAAWCNT 60 PSAADIFFSQ YGLLNSQPMP FGAFTSFHAA DFPKATSLTR SFHDLETSYF GEETSLVPEM 120 SSLLHRSLDN DVLSGKRRRV NNNQKIGFPD VLNCTIPRSL SHSLDEKMLK ALSLFMESSG 180 SGEGILAQVW TPIKIGDQYV LSTCDQAYLL DPRLSQYREV SRKFTFAAEA NQRSFPGLPG 240 RVFISGVPEW TSNVMYYKTD EYLRMKHAID NEVRGSIAIP VLEASGTSCC AVMEFVTSKQ 300 KPNFHMEMDS VCRALQSSAF VNESFPGSSG DSLLWLQPEA VNLRTSTIPR PQYLSNNQRV 360 ALAEIQDVLR AVSHAHKLPL ALAWIPCRKD QSIRVPGPNS GEKCVLCIEE TACYVNDMEM 420 EGFVHACLEH CLREKEGIVG KAFISNQPFF SSDVKAYDIS EYPLVQHARK YGLNAAVAIK 480 LRSTYTGEDD YILELFLPVS MKGSSEQQLL LDSLSGTMQR ICRTLRTVSE VGSTKKEVTN 540 PGIQSGEMSN FPQTTCLANL QTTSLDSEYN STRSIFSGMS SDKDNGITVS QGILEQDISK 600 ARTPEKKKST TEKNVSLSIL QQHFSGSLKD AAKSLGVCPT TLKRICRQHG IMRWPSRKIN 660 KVNRSLRKIQ TVLDSVQGVE GGLKFDSATG EFIAVGPFIQ EFDTQKGLLS HINDTHARKS 720 QEDMTDDTSF KLQEGKSVDN AVKLEEDITM NHESPGSFME VNASGQPWDW MVEQSGLNGS 780 EGINSVCNLI SLAISDGMDP TTRYSGSIVE PNHSLSCSIS DSSNGSGAVM RGSSSTSVED 840 WNQMRSHNNN SGGESGSTTL IVKATYREDT VRFKFEPSVG CSQLYKEVGK RFKLQDGSFQ 900 LKYLDDEEEW VMLVTDSDLQ ECLEILYGLG KHSVKFMVRD LPPPIGSSAG SNGYLGTCL*

Sequence ? help Back to Top

Protein Sequence Length: 960 aa Download sequence Send to blast

MENPFASREK GFGYQDVPTE QMDGFSTSFG SGVRSLIPDD LLNSSSELLN FDSFAAWCNT  60
PSAADIFFSQ YGLLNSQPMP FGAFTSFHAA DFPKATSLTR SFHDLETSYF GEETSLVPEM  120
SSLLHRSLDN DVLSGKRRRV NNNQKIGFPD VLNCTIPRSL SHSLDEKMLK ALSLFMESSG  180
SGEGILAQVW TPIKIGDQYV LSTCDQAYLL DPRLSQYREV SRKFTFAAEA NQRSFPGLPG  240
RVFISGVPEW TSNVMYYKTD EYLRMKHAID NEVRGSIAIP VLEASGTSCC AVMEFVTSKQ  300
KPNFHMEMDS VCRALQSSAF VNESFPGSSG DSLLWLQPEA VNLRTSTIPR PQYLSNNQRV  360
ALAEIQDVLR AVSHAHKLPL ALAWIPCRKD QSIRVPGPNS GEKCVLCIEE TACYVNDMEM  420
EGFVHACLEH CLREKEGIVG KAFISNQPFF SSDVKAYDIS EYPLVQHARK YGLNAAVAIK  480
LRSTYTGEDD YILELFLPVS MKGSSEQQLL LDSLSGTMQR ICRTLRTVSE VGSTKKEVTN  540
PGIQSGEMSN FPQTTCLANL QTTSLDSEYN STRSIFSGMS SDKDNGITVS QGILEQDISK  600
ARTPEKKKST TEKNVSLSIL QQHFSGSLKD AAKSLGVCPT TLKRICRQHG IMRWPSRKIN  660
KVNRSLRKIQ TVLDSVQGVE GGLKFDSATG EFIAVGPFIQ EFDTQKGLLS HINDTHARKS  720
QEDMTDDTSF KLQEGKSVDN AVKLEEDITM NHESPGSFME VNASGQPWDW MVEQSGLNGS  780
EGINSVCNLI SLAISDGMDP TTRYSGSIVE PNHSLSCSIS DSSNGSGAVM RGSSSTSVED  840
WNQMRSHNNN SGGESGSTTL IVKATYREDT VRFKFEPSVG CSQLYKEVGK RFKLQDGSFQ  900
LKYLDDEEEW VMLVTDSDLQ ECLEILYGLG KHSVKFMVRD LPPPIGSSAG SNGYLGTCL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	139	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa06g049730.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC002335	0.0	AC002335.3 Arabidopsis thaliana chromosome 2 clone T1O24 map CIC10F02, complete sequence.
GenBank	AY102562	0.0	AY102562.1 Arabidopsis thaliana hypothetical protein (At2g43500/T1O24.24) mRNA, complete cds.
GenBank	AY102563	0.0	AY102563.1 Arabidopsis thaliana hypothetical protein (At2g43500/T1O24.24) mRNA, complete cds.
GenBank	AY649251	0.0	AY649251.1 Arabidopsis thaliana hypothetical protein (At2g43500) gene, complete cds.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019082368.1	0.0	PREDICTED: protein NLP8-like isoform X4
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	R0FUG6	0.0	R0FUG6_9BRAS; Uncharacterized protein
STRING	XP_010517916.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]