PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g049330.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 337aa    MW: 36828.7 Da    PI: 6.9373
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g049330.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.3e-11243288655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri  ++ +L+el+P+     +k  s a++L +Ave+Ik Lq
  Csa06g049330.1 243 SIAERERRTRISGKLKKLQELVPNM----DKQTSYADMLDLAVEHIKGLQ 288
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.075237287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-13240293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.96E-11241292No hitNo description
Gene3DG3DSA:4.10.280.101.0E-11242292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12243293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-9243288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MYPPNSSKST APDGVHADIN QYDSTAGATR DFSSLGSQTH HPLPPPRQQQ HNPNVVGHYL  60
SGEPSSVGFD SGASSSSLFR HRSSPAGFYD QHLPTDPNGF SLGRPNGGYG GGGGGTGERG  120
PSRLKSELRF SGGSSSHQEH NSLPRISEVE AAAAAIDGVA SSSMNFGNDH TNNWDDSSSH  180
ISFTIDQPGK RSKNSDFFTL ETQFSMPQTS LEMARMEHLM NIPEDSVPCR VRAKRGFATH  240
PRSIAERERR TRISGKLKKL QELVPNMDKQ TSYADMLDLA VEHIKGLQHQ VEVRPYISIY  300
VVQSDIFSNG SKVTGKGNGE MYLWGMQEAM IMNDMFP
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g049330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0044501e-98AC004450.3 Arabidopsis thaliana chromosome 2 clone F14B2 map CIC10F02, complete sequence.
GenBankCP0026851e-98CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010506173.10.0PREDICTED: transcription factor bHLH129-like isoform X1
SwissprotQ9ZW811e-153BH129_ARATH; Transcription factor bHLH129
TrEMBLR0HDD90.0R0HDD9_9BRAS; Uncharacterized protein
STRINGXP_010506173.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103291833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43140.11e-134bHLH family protein