PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa06g048540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | LBD | ||||||||
Protein Properties | Length: 254aa MW: 28509.4 Da PI: 6.709 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.3 | 2.9e-39 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC k+Cv+apyf+ eq +++fa++h++FGasn +kll++lp e+r++a+++++yeA+ar +dP+yG+v++i++lqqq+ +l+++l Csa06g048540.1 7 PCGACKFLRRKCIKECVFAPYFCYEQgASHFAAIHQVFGASNASKLLSHLPVEDRREAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQL 101 7*************************89******************************************************************* PP DUF260 95 allkee 100 + lk++ Csa06g048540.1 102 EILKQQ 107 **9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.526 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.8E-37 | 7 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Gene3D | G3DSA:1.20.58.430 | 6.9E-4 | 84 | 181 | IPR023220 | Type IV secretion system, VirB5-domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MTGSGSPCGA CKFLRRKCIK ECVFAPYFCY EQGASHFAAI HQVFGASNAS KLLSHLPVED 60 RREAATTIYY EAQARRQDPI YGCVSHIFSL QQQVVNLQTQ LEILKQQATQ SMMARDSQSI 120 ENSNCYRDYM PQHLQEPQDL HLRHHHHHHT TSNYQNINGS LETERYSDLK NIMTTSCYHQ 180 NQTGTRSFIG AGGDTTAASY YYNSSSGCSE EINSTIGEFS KYSELDQHLN TFNQHLHGGG 240 GNDLLSASFE YTP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-34 | 3 | 102 | 7 | 105 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-34 | 3 | 102 | 7 | 105 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa06g048540.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473848 | 1e-165 | AB473848.1 Arabidopsis thaliana ASL15 mRNA for ASYMMETRIC LEAVES2-like 15 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010517770.1 | 0.0 | PREDICTED: LOB domain-containing protein 17-like | ||||
Swissprot | Q9SLB6 | 1e-124 | LBD17_ARATH; LOB domain-containing protein 17 | ||||
TrEMBL | D7LI62 | 1e-126 | D7LI62_ARALL; Uncharacterized protein | ||||
STRING | XP_010517770.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42440.1 | 1e-109 | LBD family protein |
Publications ? help Back to Top | |||
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