PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa06g048510.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

VOZ

Protein Properties

Length: 453aa MW: 50931.6 Da PI: 4.897

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa06g048510.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	401.8	1.5e-123	226	435	2	216
VOZ 2 ppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelf 96 ppsaflgpkcalwdctrpa+gsew+ dycs++hatlalne++pg tpvlrp+gi+lkd+ll++al+ak+qgk+vgip+cega+++k+pwnaaelf Csa06g048510.1 226 PPSAFLGPKCALWDCTRPAHGSEWYLDYCSNYHATLALNEDSPGATPVLRPGGISLKDNLLIDALRAKTQGKNVGIPVCEGAVNTKCPWNAAELF 320 7******************************************************************************************** PP VOZ 97 dlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvd 191 +l+l+egetirewlffdkprra++sgnrkqrslpdysgrgwhesrkq+mke++g+krsyymdpqp++sf+whl+ey+ine+d++alyrle k+ + Csa06g048510.1 321 HLELVEGETIREWLFFDKPRRAYDSGNRKQRSLPDYSGRGWHESRKQLMKEQEGQKRSYYMDPQPPGSFQWHLFEYQINESDECALYRLEKKVGN 415 ******************************************************************************************* PP VOZ 192 ekksakgkvskdsladlqkklgrlt 216 +kks+k d+ladlqkk+g+++ Csa06g048510.1 416 GKKSPK-----DPLADLQKKMGQFK 435 97.....8********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MSNHPKMTCV SSAHQNLEEK LRELQEKFCH LQAARKEGRH GDLALLEAQI SQNLREWQAE 60 LTAPSPESSL LGEGISQFLE EFAEFAPLLK LDEEDDATST LKEHAAPKPE PEGFAQTLCP 120 PEWTSDHFSQ SPFNGNFSCG VEDAGNNTET HGQQLHYAFE GFDSSINTAP DFHDQKLSNL 180 DITSQYDYIC SEVRQELDNS PSIKLDSSEE IENFAEFTTP SSVRVPPSAF LGPKCALWDC 240 TRPAHGSEWY LDYCSNYHAT LALNEDSPGA TPVLRPGGIS LKDNLLIDAL RAKTQGKNVG 300 IPVCEGAVNT KCPWNAAELF HLELVEGETI REWLFFDKPR RAYDSGNRKQ RSLPDYSGRG 360 WHESRKQLMK EQEGQKRSYY MDPQPPGSFQ WHLFEYQINE SDECALYRLE KKVGNGKKSP 420 KDPLADLQKK MGQFKVASDK PSPQSNSRLL QQ*

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MSNHPKMTCV SSAHQNLEEK LRELQEKFCH LQAARKEGRH GDLALLEAQI SQNLREWQAE  60
LTAPSPESSL LGEGISQFLE EFAEFAPLLK LDEEDDATST LKEHAAPKPE PEGFAQTLCP  120
PEWTSDHFSQ SPFNGNFSCG VEDAGNNTET HGQQLHYAFE GFDSSINTAP DFHDQKLSNL  180
DITSQYDYIC SEVRQELDNS PSIKLDSSEE IENFAEFTTP SSVRVPPSAF LGPKCALWDC  240
TRPAHGSEWY LDYCSNYHAT LALNEDSPGA TPVLRPGGIS LKDNLLIDAL RAKTQGKNVG  300
IPVCEGAVNT KCPWNAAELF HLELVEGETI REWLFFDKPR RAYDSGNRKQ RSLPDYSGRG  360
WHESRKQLMK EQEGQKRSYY MDPQPPGSFQ WHLFEYQINE SDECALYRLE KKVGNGKKSP  420
KDPLADLQKK MGQFKVASDK PSPQSNSRLL QQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ1 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Binds as a dimer to the palindromic sequence 5'-GCGTNNNNNNNACGC-3'. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa06g048510.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. Down-regulated by far-red light (at protein level). {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB125257	0.0	AB125257.1 Arabidopsis thaliana AtVOZ2 mRNA for Transcription factor AtVOZ2, complete cds.
GenBank	AF361831	0.0	AF361831.1 Arabidopsis thaliana At2g42400/MHK10.12 mRNA, complete cds.
GenBank	AY078048	0.0	AY078048.1 Arabidopsis thaliana At2g42400/MHK10.12 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010517762.1	0.0	PREDICTED: transcription factor VOZ2
Refseq	XP_010517763.1	0.0	PREDICTED: transcription factor VOZ2
Swissprot	Q9SLB9	0.0	VOZ2_ARATH; Transcription factor VOZ2
TrEMBL	R0FVW1	0.0	R0FVW1_9BRAS; Uncharacterized protein
STRING	XP_010517761.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11060	25	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42400.1	0.0	vascular plant one zinc finger protein 2

Publications ? help Back to Top
Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Koguchi M,Yamasaki K,Hirano T,Sato MH Vascular plant one-zinc-finger protein 2 is localized both to the nucleus and stress granules under heat stress in Arabidopsis. Plant Signal Behav, 2017. 12(3): p. e1295907 [PMID:28277968] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119]