PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa06g048330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 221aa MW: 23861.8 Da PI: 8.2446 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.1 | 2.7e-07 | 189 | 215 | 4 | 30 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++iN ++ L+el+P + Csa06g048330.1 189 NHSLAERARREKINARMKLLQELVPGC 215 79***********************75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.29E-5 | 183 | 217 | No hit | No description |
SuperFamily | SSF47459 | 6.41E-8 | 183 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.077 | 185 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.5E-8 | 188 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.1E-5 | 189 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MDLTQGFGAR SGIGPVTGLE SLNFSDEFRQ LVTAMPPEDT GGSFTALLEM PVTQAMELLH 60 FADSPSSQAN ITKLAGDNIA PPHPFGTLTF PSNSLLLDRA ARFSLIATEQ NGYFSSGDTP 120 SSSANLDGGV KAEPAETDSI SENQNSKHNK RKEREKKGKS SMKKTKSSVE ADKLPYVHVR 180 ARRGQATDNH SLAERARREK INARMKLLQE LVPGCDKVCL * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa06g048330.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK175584 | 3e-79 | AK175584.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH048), complete cds, clone: RAFL22-03-O22. | |||
GenBank | AK176019 | 3e-79 | AK176019.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH048), complete cds, clone: RAFL22-72-P11. | |||
GenBank | AK176634 | 3e-79 | AK176634.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH048), complete cds, clone: RAFL25-17-F11. | |||
GenBank | AY065411 | 3e-79 | AY065411.1 Arabidopsis thaliana unknown protein (At2g42300) mRNA, complete cds. | |||
GenBank | AY096521 | 3e-79 | AY096521.1 Arabidopsis thaliana unknown protein (At2g42300) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010517746.1 | 1e-159 | PREDICTED: transcription factor bHLH48-like | ||||
Swissprot | Q8VZ02 | 1e-101 | BH048_ARATH; Transcription factor bHLH48 | ||||
TrEMBL | R0FXN3 | 1e-117 | R0FXN3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010517746.1 | 1e-158 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2576 | 27 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42300.2 | 1e-101 | bHLH family protein |
Publications ? help Back to Top | |||
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