PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g048310.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 370aa    MW: 41013.8 Da    PI: 7.9717
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g048310.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-12301346655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el+P+     +k  + +++L +Av+YIk+Lq
  Csa06g048310.1 301 SIAERVRRTRISERMRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 346
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.9295345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-15298361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.44E-11299348No hitNo description
Gene3DG3DSA:4.10.280.103.4E-13300357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-12301351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-9301346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MDSNNHLYDP NHISSSGSGG GLLRFRSAPS SVLSSFVDQD KSGFDSSDRL LSRFVTSDGV  60
NEDLGVSPKF EDNKPPVSLT SNTSVSYAAA TLPPPQPEPS SFLGLPPHYP RQSKGMMNSI  120
GLDQFLGMSN HHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGPMRNLINY EEDEVSPSHS  180
NGLRRHCSLS SRPPSSLGML SQIPEISPET SFQYSHWNDP SNFIDNLSSL KRETDDDGKL  240
FLGAQNGDSG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR  300
SIAERVRRTR ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK ILNENRAHCK  360
CMNKEKKSI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g048310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2289810.0AK228981.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL16-28-L05.
GenBankBT0153390.0BT015339.1 Arabidopsis thaliana At2g42280 gene, complete cds.
GenBankBT0157120.0BT015712.1 Arabidopsis thaliana At2g42280 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010517744.10.0PREDICTED: transcription factor bHLH130 isoform X2
SwissprotQ66GR30.0BH130_ARATH; Transcription factor bHLH130
TrEMBLD7LI370.0D7LI37_ARALL; Basic helix-loop-helix family protein
STRINGXP_010517743.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62932745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]