PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa06g048230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | SBP | ||||||||
Protein Properties | Length: 369aa MW: 40055.9 Da PI: 8.3299 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 137.1 | 5.3e-43 | 73 | 150 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC +dl++ak y++rh+vC +hsk+p+v+v gleqrfCqqCsrfh+l efD ekrsCrrrLa+hnerrrk+q+ Csa06g048230.1 73 RCQVEGCGTDLTNAKGYYSRHRVCGMHSKTPKVIVGGLEQRFCQQCSRFHQLPEFDLEKRSCRRRLAGHNERRRKPQP 150 6**************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 8.8E-35 | 66 | 135 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.966 | 71 | 148 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.22E-40 | 72 | 152 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.8E-32 | 74 | 147 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MEMGSNSGPG LGPGQAESGG SSTESSSFSG GLMFGQKIYF EDGGRGSGSS SSGGGSNRRV 60 RGGGSGQSGQ IPRCQVEGCG TDLTNAKGYY SRHRVCGMHS KTPKVIVGGL EQRFCQQCSR 120 FHQLPEFDLE KRSCRRRLAG HNERRRKPQP ASLSVLSSRY GRIAPSLYGN ADAGMNGSFL 180 GNQEMGWTST RTLDTRVIRR PVSAPSWQIN PMNVFSQGSV GGGGSSFSSP EIRDTKLESY 240 KGMGDSNCAL SLLSNPHQPQ DNNNNNTWRA SSGFCPMTVT MAQPPPAPSQ HQYLNPPWVF 300 KDDDNDMSPV LNLGRFTEPD NCQISNGTTT IGDQFELSDH HHQSRRQYIE DENTRAYDSS 360 SHHNNWSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-29 | 63 | 147 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa06g048230.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353538 | 0.0 | AK353538.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-J24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010517734.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 9 | ||||
Swissprot | Q700W2 | 0.0 | SPL9_ARATH; Squamosa promoter-binding-like protein 9 | ||||
TrEMBL | R0HTJ6 | 0.0 | R0HTJ6_9BRAS; Uncharacterized protein | ||||
STRING | XP_010517734.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2144 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 0.0 | squamosa promoter binding protein-like 9 |