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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Csa06g047660.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family |
AP2 |
Protein Properties |
Length: 507aa MW: 55338.7 Da PI: 8.0939 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Csa06g047660.1 | genome | CSGP | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 22.4 | 3.1e-07 | 72 | 105 | 1 | 31 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krf 31
s y+GV++++++gr++A+++d ++n+ ++ k
Csa06g047660.1 72 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNkKGK 105
57*******************6666666443444 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 507 aa
Download sequence Send
to blast |
MASVSSSDHG PKTEAGCSGG GGGGGGESSE TVAASDQMLL YRGFKKAKKE RGCTAKERIS 60 KMPPCTAGKR SSIYRGVTRH RWTGRYEAHL WDKSTWNQNQ NKKGKQASKL IFSVSFVSSF 120 MVDANIATPV YLGAYDDEEA AARAYDLAAL KYWGPGTLIN FPVTDYTRDL EEMQSLSREE 180 YLASLRRKSS GFSRGIAKYR GLQSRWDASA SRMPGPEYFS NIHYGAGDDR GTEGDFLGSF 240 CLERKIDLTG YIKWWGVNKT RQPESSSKAS EDAKVEDAGA GDDRGTEGDF LGSFCLERKI 300 DLTGYIKWWG VNKTRQPESS SKASEDAKVE DAGTELKTLE HTSQATEPYK VPNLGVLRGS 360 QKKEKEISSP SSSSALSILS QSPAYKSLEE KVLKIQESST NENDENANRN IINMEKNHGK 420 AIEKPVVSHG VPLGGAAASA ALSLQKSMYP LTSLLTAPLL TNYNTLDPLG DPILWTPFLP 480 SGSFHTSEVT KTETSCSTYS YIPQEK*
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Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY088118 | 0.0 | AY088118.1 Arabidopsis thaliana clone 41462 mRNA, complete sequence. |
GenBank | BT025985 | 0.0 | BT025985.1 Arabidopsis thaliana At2g41710 mRNA, complete cds. |