PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa06g046490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | TCP | ||||||||
Protein Properties | Length: 419aa MW: 46054.5 Da PI: 8.0692 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 125.4 | 6.1e-39 | 55 | 197 | 2 | 135 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 g+kdrhsk+ T++g+RdRRvRls+++a +f+dLqd+LG+d++sk++eWL+++a+ +i el+++ ++a++ ++++++++++n++ + Csa06g046490.1 55 SGGKDRHSKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIKAAEDSISELPSL--NNANFPTDDDENQNHQNQTLTtttvaagg 147 689*************************************************************..44444444555555554444467888899 PP TCP 89 .kaaksaa.kskksqksaasalnlak.esrakarararertrekmriknk 135 ++ +++a +s++++++++s l+l++ e r kar+rarert+++ + +++ Csa06g046490.1 148 tNSLSKSAcSSNSDTSKNSSGLSLSRsELRDKARERARERTAKETKERSS 197 9666666668888888888899**999***************99988866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.8E-38 | 56 | 194 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.221 | 57 | 115 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.205 | 174 | 195 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MLRKLRDDDE MIGDLMKSNN NNGDVVDNNN NNGNNNRLSR WHHNSSRIIR VSRASGGKDR 60 HSKVLTSKGP RDRRVRLSVS TALQFYDLQD RLGYDQPSKA VEWLIKAAED SISELPSLNN 120 ANFPTDDDEN QNHQNQTLTT TTVAAGGTNS LSKSACSSNS DTSKNSSGLS LSRSELRDKA 180 RERARERTAK ETKERSSDHH HHQSHTTTSF TDLLNSGSDP VNSNRQWMAQ APSASSPMEY 240 FTSGLILGSG QQTHFPISTN SHPFSSISDH HHHHQHHHPH QEFSFVPDHL ISPAGSNGGA 300 FNLDFNMSTP SGAGAAVSAS SGGGFSGFNR GTLQSNSTTS NHQHQHQHQQ QSFLANLQRF 360 PTSSEGGGGG PQFLFGALPA ENHHHNHNHN QNNNNHQFQL YYENGCRNSS DHKGKGKN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-23 | 62 | 116 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-23 | 62 | 116 | 1 | 55 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa06g046490.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF367270 | 1e-142 | AF367270.1 Arabidopsis thaliana AT4g18390/F28J12_50 mRNA, complete cds. | |||
GenBank | AF367292 | 1e-142 | AF367292.1 Arabidopsis thaliana AT4g18390/F28J12_50 mRNA, complete cds. | |||
GenBank | AL021710 | 1e-142 | AL021710.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F28J12 (ESSAII project). | |||
GenBank | AL161548 | 1e-142 | AL161548.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 48. | |||
GenBank | AY102141 | 1e-142 | AY102141.1 Arabidopsis thaliana AT4g18390/F28J12_50 mRNA, complete cds. | |||
GenBank | CP002687 | 1e-142 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010517540.1 | 0.0 | PREDICTED: transcription factor TCP2-like | ||||
Swissprot | Q93V43 | 0.0 | TCP2_ARATH; Transcription factor TCP2 | ||||
TrEMBL | D7MCT1 | 0.0 | D7MCT1_ARALL; Uncharacterized protein | ||||
STRING | XP_010517540.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7615 | 25 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 1e-137 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Publications ? help Back to Top | |||
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